Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g03634 ATGGCGCCCAAGAGAGCTACACACACCGATAGCGACGACGAAGACGACATCTTCTACTACCGCTTCTGCTCTTCTTCCTCATCTGCCCAAGCCCAGGCCCAGACTAAGACTATTACTACTGCTGCTGGATCCGCTTCTTCTTCTTCCTTGGCTCCCTCAAAATCAACCCTCTACGTTTCCAACCTGGACTACGCCCTAACCAACTCCGACCTCCACACACTCTTCTCCACCTTCGGCCGCATTGCCCGCGTAACCGTTCTCAAGGACCGCCACACCCGACTCAGTCGCGGCGTCGCCTTCGTCCAATTCGTCACTCGCGAAGACGCCCGCCGCGCCGCTGATCAAATGCACGGCAAGATCCTCAACGGCCGCACGCTCTCCGCCTCCATCGCACTCGACAACGGCCGCGCTCCGGAGTTCATTCGCAAGCGCGTCTACAAGGACACTGGCCGCTGCTTCGAGTGCGGCCAGTCCGGACACCTCTCCTACGACTGTCCCCGCAACCGCCTGGGTCCTCGCCAGCGCCCGCCTCCGAAGCGTGGCAGGCGCGGAGGCGGCGGAGCTATGGGAAGAGGCGGGAGAGGCAGCCGGCGAAGGGAGGAAGATGACGATGACGATGATGATGACGATGAGGGATCAGACGGTGGCGGTGGCGGCGCGGATCGGTTTGAGGATGATAATTGGGCTTCGGTTGTAGACGGCGGCGCCGATGAGAGGCTTTTGGGGAGGAATGAGAAGGTTGTTGCCAAGAAGAAAGAGAAGAAAGCTGGGTACTTCAGCGATGAGAGCGATGAAGGTGATGAATGA 807 0.5985 MAPKRATHTDSDDEDDIFYYRFCSSSSSAQAQAQTKTITTAAGSASSSSLAPSKSTLYVSNLDYALTNSDLHTLFSTFGRIARVTVLKDRHTRLSRGVAFVQFVTREDARRAADQMHGKILNGRTLSASIALDNGRAPEFIRKRVYKDTGRCFECGQSGHLSYDCPRNRLGPRQRPPPKRGRRGGGGAMGRGGRGSRRREEDDDDDDDDDEGSDGGGGGADRFEDDNWASVVDGGADERLLGRNEKVVAKKKEKKAGYFSDESDEGDE 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g03634 268 Pfam Zinc knuckle 151 166 IPR001878 GO:0003676|GO:0008270
Arst10g03634 268 SMART c2hcfinal6 151 167 IPR001878 GO:0003676|GO:0008270
Arst10g03634 268 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 55 133 IPR000504 GO:0003723
Arst10g03634 268 SMART rrm2_1 56 129 IPR003954 GO:0003676
Arst10g03634 268 SUPERFAMILY RNA-binding domain, RBD 42 139 IPR035979 GO:0003676
Arst10g03634 268 FunFam U11/U12 small nuclear ribonucleoprotein 31 kDa protein 1 139 - -
Arst10g03634 268 Gene3D - 142 179 - -
Arst10g03634 268 SUPERFAMILY Retrovirus zinc finger-like domains 134 169 IPR036875 GO:0003676|GO:0008270
Arst10g03634 268 ProSiteProfiles Zinc finger CCHC-type profile. 151 167 IPR001878 GO:0003676|GO:0008270
Arst10g03634 268 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 9 267 IPR044598 GO:0000398|GO:0005689
Arst10g03634 268 SMART rrm1_1 56 129 IPR000504 GO:0003723
Arst10g03634 268 MobiDBLite consensus disorder prediction 163 268 - -
Arst10g03634 268 MobiDBLite consensus disorder prediction 238 261 - -
Arst10g03634 268 Gene3D - 23 226 IPR012677 -
Arst10g03634 268 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 57 126 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g03634 Arst-Chr10 104058576 104059726 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g03634 57 131 Eukaryotic Initiation Factors Gene Family AT1G34140 40.789 2.80e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g03634 K13154 - gmx:100814914 294.664