Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g03601 ATGGCTATGTTCTTCACGGAGTTGTATTCTTCTGAAACGCGTAAACTAATTGAACGACTCGTTAATTATATTATTTATAAGGGGACATTTCTACCACTGATTGTGCCACCGACAGTATATCAGGCTGGTCTTTGGTCAACATGGCTGACTGTGCTCTGTTCTTTAAAGATGTTTCAAGCTTTGGCTAGAGATCGTTTGGAGCGGCTGAATGCATCTCCATCTGTGACACCTTGGACATATCTTCGTGTATATTCAGCATTGTTATTCGTTTTCTTCATTGATGTTTTCTGGATAAGGTTTTGTGTGTCGGTATATAGAAGTGATCCATCCTCTCTGCATCTGTTACTATTCTTTGAGCCATTAAGTATTGCTTTTGAGACCCTACAGGCCATTTTGGTGCATGGATTTCAGTTCCTTGACATATGGCTTCCTCATTCAGCTTGCAACAGCAGTGATTGCCAAATGCCTAAATTGTTTAATACACTAACAGCAGGTGTCTTACTGGAATGGAAGGGAACTCTTATTCGGAACTTCGGGTTTTTCCTCGATATGGCAACATTTTTAATGGCACTTGGCCATTACCTGTACATATGGCGTCTTCATGGGATGGCTTTTCATCTAGTAGACGCAGTGTTGTTCCTAAACATACGGGCATTGCTTGGTGCAATTATAAATCGTATAAAAAGCTTCCATAGGTTAAGGATAGCTCTAGGAGCACTTAATGCTGCTCTTCCTGATGCGACAGATGAGGAGTTAAGAGCATATGATGATGAATGCGCTATTTGTAGAGAATCCATGGCTAAGGCAAAAAGGTTAAACTGCAATCACCTTTTCCATCTTGCATGTTTGAGATCTTGGTTGGATCAAGGCCTGACTGAAATGTATACTTGTCCCACATGCCGAAAGCCTCTTTTTCCGGGCCGGTCAGAAAATGAAACAAGCTCCAATGTCGGGGGAATATCTAGTGACGAGCAACTGGTACGCAATACAAATGCAGGACTGGATCGGCAAAACTCTGTTAGAAATACCATGCCTGCAGTATTGTATCCCAATCATATACCAAACTTGGCAGACAATGTCCCTTGGAGGGGTGCAGGACTGGACTCAGGCTGGTTGCATTCTTGGCCAAATCAGGGTATTGATGGAGCTGGTCCATCATCTACAACAATCAGAACGGTTGGATTAGGAAGAGTTCAAATGATGATGAGGCAGCTAACATCTGTGGGAGAAACCTATGCCCAGGGTGCCTTTGAAGATGCTTCCTGGGGCCTCTGGCCTATTAATCCCTCCCAGGCTTCTTCTAGTAATCCTACCGTTTCTGTAGGTGAGAGGCCGTCAGGAGGATCAGGTAGCTTACATAGAAGAACTGGTTCACAATCTGCAAATGATAATATGGCTAATATTCTTGCTATGGCCGAAACTGTTCGGGAGGTTTTACCTCATATTCCAGATGACATAATATTCCAGGACTTGCAGAGAACAAACTCTGTCACAGTTACTGTGAATAATCTTCTTCAAATGTAA 1524 0.4285 MAMFFTELYSSETRKLIERLVNYIIYKGTFLPLIVPPTVYQAGLWSTWLTVLCSLKMFQALARDRLERLNASPSVTPWTYLRVYSALLFVFFIDVFWIRFCVSVYRSDPSSLHLLLFFEPLSIAFETLQAILVHGFQFLDIWLPHSACNSSDCQMPKLFNTLTAGVLLEWKGTLIRNFGFFLDMATFLMALGHYLYIWRLHGMAFHLVDAVLFLNIRALLGAIINRIKSFHRLRIALGALNAALPDATDEELRAYDDECAICRESMAKAKRLNCNHLFHLACLRSWLDQGLTEMYTCPTCRKPLFPGRSENETSSNVGGISSDEQLVRNTNAGLDRQNSVRNTMPAVLYPNHIPNLADNVPWRGAGLDSGWLHSWPNQGIDGAGPSSTTIRTVGLGRVQMMMRQLTSVGETYAQGAFEDASWGLWPINPSQASSSNPTVSVGERPSGGSGSLHRRTGSQSANDNMANILAMAETVREVLPHIPDDIIFQDLQRTNSVTVTVNNLLQM 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g03601 507 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 232 309 IPR013083 -
Arst10g03601 507 Pfam CUE domain 471 507 IPR003892 GO:0043130
Arst10g03601 507 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF8 3 507 - -
Arst10g03601 507 SMART ring_2 259 300 IPR001841 -
Arst10g03601 507 CDD CUE_RIN3_plant 468 505 IPR035667 -
Arst10g03601 507 Gene3D - 466 506 - -
Arst10g03601 507 ProSiteProfiles Zinc finger RING-type profile. 259 301 IPR001841 -
Arst10g03601 507 FunFam E3 ubiquitin protein ligase RIN2 232 311 - -
Arst10g03601 507 SUPERFAMILY RING/U-box 245 307 - -
Arst10g03601 507 ProSiteProfiles CUE domain profile. 467 507 IPR003892 GO:0043130
Arst10g03601 507 MobiDBLite consensus disorder prediction 428 461 - -
Arst10g03601 507 FunFam E3 ubiquitin protein ligase RIN2 466 506 - -
Arst10g03601 507 CDD RING-H2_AMFR 257 304 - -
Arst10g03601 507 Pfam Ring finger domain 257 301 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g03601 Arst-Chr10 103756934 103764185 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g03601 14 318 C3H Transcription Factor Family AT3G16090 29.022 2.00e-27 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g03601 K10636 - gmx:100819656 832.402