Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g03600 ATGTTCTTCACGGAGTTGTATTCTTCTGAAACGCGTAAACTAATTGAACGACTCGTTAATTATATTATTTATAAGGGGACATTTCTACCACTGATTGTGCCACCGACAGTATATCAGGCTGGTCTTTGGTCAACATGGCTGACTGTGCTCTGTTCTTTAAAGATGTTTCAAGCTTTGGCTAGAGATCGTTTGGAGCGGCTGAATGCATCTCCATCTGTGACACCTTGGACATATCTTCGTGTATATTCAGCATTGTTATTCGTTTTCTTCATTGATGTTTTCTGGATAAGGTTTTGTGTGTCGGTATATAGAAGTGATCCATCCTCTCTGCATCTGTTACTATTCTTTGAGCCATTAAGTATTGCTTTTGAGACCCTACAGGCCATTTTGGTGCATGGATTTCAGTTCCTTGACATATGGCTTCCTCATTCAGCTTGCAACAGCAGTGATTGCCAAATGCCTAAATTGTTTAATACACTAACAGCAGGTGTCTTACTGGAATGGAAGGGAACTCTTATTCGGAACTTCGGGTTTTTCCTCGATATGGCAACATTTTTAATGGCACTTGGCCATTACCTGTACATATGGCGTCTTCATGGGATGGCTTTTCATCTAGTAGACGCAGTGTTGTTCCTAAACATACGGGCATTGCTTGGTGCAATTATAAATCGTATAAAAAGCTTCCATAGGTTAAGGATAGCTCTAGGAGCACTTAATGCTGCTCTTCCTGATGCGACAGATGAGGAGTTAAGAGCATATGATGATGAATGCGCTATTTGTAGAGAATCCATGGCTAAGGCAAAAAGGTTAAACTGCAATCACCTTTTCCATCTTGCATGTTTGAGATCTTGGTTGGATCAAGGCCTGACTGAAATGTATACTTGTCCCACATGCCGAAAGCCTCTTTTTCCGGGCCGGTCAGAAAATGAAACAAGCTCCAATGTCGGGGGAATATCTAGTGACGAGCAACTGGTACGCAATACAAATGCAGGACTGGATCGGCAAAACTCTGTTAGAAATACCATGCCTGCAGTATTGTATCCCAATCATATACCAAACTTGGCAGACAATGTCCCTTGGAGGGGTGCAGGACTGGACTCAGGCTGGTTGCATTCTTGGCCAAATCAGGGTATTGATGGAGCTGGTCCATCATCTACAACAATCAGAACGGTTGGATTAGGAAGAGTTCAAATGATGATGAGGCAGCTAACATCTGTGGGAGAAACCTATGCCCAGGGTGCCTTTGAAGATGCTTCCTGGGGCCTCTGGCCTATTAATCCCTCCCAGGCTTCTTCTAGTAATCCTACCGTTTCTGTAGGTGAGAGGCCGTCAGGAGGATCAGGTAGCTTACATAGAAGAACTGGTTCACAATCTGCAAATGATAATATGGCTAATATTCTTGCTATGGCCGAAACTGTTCGGGAGGTTTTACCTCATATTCCAGATGACATAATATTCCAGGACTTGCAGAGAACAAACTCTGTCACAGTTACTGTGAATAATCTTCTTCAAATGTAA 1518 0.4282 MFFTELYSSETRKLIERLVNYIIYKGTFLPLIVPPTVYQAGLWSTWLTVLCSLKMFQALARDRLERLNASPSVTPWTYLRVYSALLFVFFIDVFWIRFCVSVYRSDPSSLHLLLFFEPLSIAFETLQAILVHGFQFLDIWLPHSACNSSDCQMPKLFNTLTAGVLLEWKGTLIRNFGFFLDMATFLMALGHYLYIWRLHGMAFHLVDAVLFLNIRALLGAIINRIKSFHRLRIALGALNAALPDATDEELRAYDDECAICRESMAKAKRLNCNHLFHLACLRSWLDQGLTEMYTCPTCRKPLFPGRSENETSSNVGGISSDEQLVRNTNAGLDRQNSVRNTMPAVLYPNHIPNLADNVPWRGAGLDSGWLHSWPNQGIDGAGPSSTTIRTVGLGRVQMMMRQLTSVGETYAQGAFEDASWGLWPINPSQASSSNPTVSVGERPSGGSGSLHRRTGSQSANDNMANILAMAETVREVLPHIPDDIIFQDLQRTNSVTVTVNNLLQM 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g03600 505 MobiDBLite consensus disorder prediction 426 459 - -
Arst10g03600 505 SUPERFAMILY RING/U-box 243 305 - -
Arst10g03600 505 Gene3D - 464 504 - -
Arst10g03600 505 CDD RING-H2_AMFR 255 302 - -
Arst10g03600 505 ProSiteProfiles Zinc finger RING-type profile. 257 299 IPR001841 -
Arst10g03600 505 FunFam E3 ubiquitin protein ligase RIN2 464 504 - -
Arst10g03600 505 Pfam Ring finger domain 255 299 IPR001841 -
Arst10g03600 505 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 230 307 IPR013083 -
Arst10g03600 505 ProSiteProfiles CUE domain profile. 465 505 IPR003892 GO:0043130
Arst10g03600 505 CDD CUE_RIN3_plant 466 503 IPR035667 -
Arst10g03600 505 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF8 2 505 - -
Arst10g03600 505 SMART ring_2 257 298 IPR001841 -
Arst10g03600 505 Pfam CUE domain 469 505 IPR003892 GO:0043130
Arst10g03600 505 FunFam E3 ubiquitin protein ligase RIN2 230 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g03600 Arst-Chr10 103756910 103764185 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g03600 12 316 C3H Transcription Factor Family AT3G16090 29.022 1.79e-27 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g03600 K10636 - gmx:100819656 830.861