Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g03599 ATGGCTTTGAGGATCATAGCAATTTCTGGGGTTTCTACAGTGTTAAGCTTTATTGCTTTGCACTTCTGCTCAGAATTTTCACTATACAAACTCATTTCTGATGGAATAATTAACTTAGACAATAATAATAATATTAATATTAATAGTAATAATATTACCAAGATTGATGAGTTGCCTTTTGATTTTTCCACCACCATTGGGTTGTTGGCGAATTGCTTCATCAATGTTTTCATTCTTATCAATCTTTGTCTCAAGGCTATGTTCTTCACGGAGTTGTATTCTTCTGAAACGCGTAAACTAATTGAACGACTCGTTAATTATATTATTTATAAGGGGACATTTCTACCACTGATTGTGCCACCGACAGTATATCAGGCTGGTCTTTGGTCAACATGGCTGACTGTGCTCTGTTCTTTAAAGATGTTTCAAGCTTTGGCTAGAGATCGTTTGGAGCGGCTGAATGCATCTCCATCTGTGACACCTTGGACATATCTTCGTGTATATTCAGCATTGTTATTCGTTTTCTTCATTGATGTTTTCTGGATAAGGTTTTGTGTGTCGGTATATAGAAGTGATCCATCCTCTCTGCATCTGTTACTATTCTTTGAGCCATTAAGTATTGCTTTTGAGACCCTACAGGCCATTTTGGTGCATGGATTTCAGTTCCTTGACATATGGCTTCCTCATTCAGCTTGCAACAGCAGTGATTGCCAAATGCCTAAATTGTTTAATACACTAACAGCAGGTGTCTTACTGGAATGGAAGGGAACTCTTATTCGGAACTTCGGGTTTTTCCTCGATATGGCAACATTTTTAATGGCACTTGGCCATTACCTGTACATATGGCGTCTTCATGGGATGGCTTTTCATCTAGTAGACGCAGTGTTGTTCCTAAACATACGGGCATTGCTTGGTGCAATTATAAATCGTATAAAAAGCTTCCATAGGTTAAGGATAGCTCTAGGAGCACTTAATGCTGCTCTTCCTGATGCGACAGATGAGGAGTTAAGAGCATATGATGATGAATGCGCTATTTGTAGAGAATCCATGGCTAAGGCAAAAAGGTTAAACTGCAATCACCTTTTCCATCTTGCATGTTTGAGATCTTGGTTGGATCAAGGCCTGACTGAAATGTATACTTGTCCCACATGCCGAAAGCCTCTTTTTCCGGGCCGGTCAGAAAATGAAACAAGCTCCAATGTCGGGGGAATATCTAGTGACGAGCAACTGGTACGCAATACAAATGCAGGACTGGATCGGCAAAACTCTGTTAGAAATACCATGCCTGCAGTATTGTATCCCAATCATATACCAAACTTGGCAGACAATGTCCCTTGGAGGGGTGCAGGACTGGACTCAGGCTGGTTGCATTCTTGGCCAAATCAGGGTATTGATGGAGCTGGTCCATCATCTACAACAATCAGAACGGTTGGATTAGGAAGAGTTCAAATGATGATGAGGCAGCTAACATCTGTGGGAGAAACCTATGCCCAGGGTGCCTTTGAAGATGCTTCCTGGGGCCTCTGGCCTATTAATCCCTCCCAGGCTTCTTCTAGTAATCCTACCGTTTCTGTAGGTGAGAGGCCGTCAGGAGGATCAGGTAGCTTACATAGAAGAACTGGTTCACAATCTGCAAATGATAATATGGCTAATATTCTTGCTATGGCCGAAACTGTTCGGGAGGTTTTACCTCATATTCCAGATGACATAATATTCCAGGACTTGCAGAGAACAAACTCTGTCACAGTTACTGTGAATAATCTTCTTCAAATGTAA 1776 0.4122 MALRIIAISGVSTVLSFIALHFCSEFSLYKLISDGIINLDNNNNININSNNITKIDELPFDFSTTIGLLANCFINVFILINLCLKAMFFTELYSSETRKLIERLVNYIIYKGTFLPLIVPPTVYQAGLWSTWLTVLCSLKMFQALARDRLERLNASPSVTPWTYLRVYSALLFVFFIDVFWIRFCVSVYRSDPSSLHLLLFFEPLSIAFETLQAILVHGFQFLDIWLPHSACNSSDCQMPKLFNTLTAGVLLEWKGTLIRNFGFFLDMATFLMALGHYLYIWRLHGMAFHLVDAVLFLNIRALLGAIINRIKSFHRLRIALGALNAALPDATDEELRAYDDECAICRESMAKAKRLNCNHLFHLACLRSWLDQGLTEMYTCPTCRKPLFPGRSENETSSNVGGISSDEQLVRNTNAGLDRQNSVRNTMPAVLYPNHIPNLADNVPWRGAGLDSGWLHSWPNQGIDGAGPSSTTIRTVGLGRVQMMMRQLTSVGETYAQGAFEDASWGLWPINPSQASSSNPTVSVGERPSGGSGSLHRRTGSQSANDNMANILAMAETVREVLPHIPDDIIFQDLQRTNSVTVTVNNLLQM 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g03599 591 FunFam E3 ubiquitin protein ligase RIN2 550 590 - -
Arst10g03599 591 Pfam Ring finger domain 341 385 IPR001841 -
Arst10g03599 591 CDD CUE_RIN3_plant 552 589 IPR035667 -
Arst10g03599 591 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF8 11 591 - -
Arst10g03599 591 Pfam CUE domain 555 591 IPR003892 GO:0043130
Arst10g03599 591 SUPERFAMILY RING/U-box 329 391 - -
Arst10g03599 591 Gene3D - 550 590 - -
Arst10g03599 591 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 316 393 IPR013083 -
Arst10g03599 591 ProSiteProfiles CUE domain profile. 551 591 IPR003892 GO:0043130
Arst10g03599 591 ProSiteProfiles Zinc finger RING-type profile. 343 385 IPR001841 -
Arst10g03599 591 CDD RING-H2_AMFR 341 388 - -
Arst10g03599 591 FunFam E3 ubiquitin protein ligase RIN2 316 395 - -
Arst10g03599 591 SMART ring_2 343 384 IPR001841 -
Arst10g03599 591 MobiDBLite consensus disorder prediction 512 545 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g03599 Arst-Chr10 103755951 103764185 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g03599 69 402 C3H Transcription Factor Family AT3G16090 27.324 2.29e-28 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g03599 K10636 - gmx:100819656 906.746