Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g03566 ATGGATGCGGAAGATCATAATCATGCTTTGGATTTGCCTCCCGGTTTCAGGTTCCACCCTACAGATGAGGAGATCATCTCTTATTATCTCACTCACAAGGTTTTGAACACAAGTTTCACCGCAACTGCCATTGGAGAAGTTGATCTCAATAAGTGTGAGCCTTGGGACTTGCCTCAGAAAGCAAAGATGGGGGAGAAAGATTGGTACTTCTTCTGGCAAAGAGATAAAAAGTACCCAACTGGGATCAGAACGAATCGAGCCACGGAATCCGGCTACTGGAAGGCCACAGGAAAAGACAAAGAGATTTACAAAGGGAGAAACCTTGTTGGTATGAAGAAAACCCTTGTGTTCTATAGAGGTAGAGCCCCTCATGGACACAAAACCAATTGGGTTATGCATGAATTCAGATTGGAAGGCCTTTTTGCTACTTACAACCTCCCTAAACCTGCTAAGGAGGAATGGGTTGTGTCGAGGGTTTTCCATAAGAATACAACAGAAAAATTGAACCCAACTATTCCATCTGGCCTCTTTAGGATAATGAAGAACGTGAACTCAATTGAGGATGATGATCTTGTAGATTTTTCTTCTCTCCCACCTCTCATGGATCCTTCTAATAATTATGATGATGAACACACCACCACCACCAACAATATGTTTGCATCATCATCAGATTATAATATTACTATTCAGCAAAACAAGAAGGATATGATGGGAATAAGGAATAATAATATTAGAGCATTATTAATGTATGACGGTCCATCATCATCATCAGAAGTAGTTGCTCCTCCTCTCTCTGACTTGGAATTATGCCTCTGGGATTTATAA 825 0.4085 MDAEDHNHALDLPPGFRFHPTDEEIISYYLTHKVLNTSFTATAIGEVDLNKCEPWDLPQKAKMGEKDWYFFWQRDKKYPTGIRTNRATESGYWKATGKDKEIYKGRNLVGMKKTLVFYRGRAPHGHKTNWVMHEFRLEGLFATYNLPKPAKEEWVVSRVFHKNTTEKLNPTIPSGLFRIMKNVNSIEDDDLVDFSSLPPLMDPSNNYDDEHTTTTNNMFASSSDYNITIQQNKKDMMGIRNNNIRALLMYDGPSSSSEVVAPPLSDLELCLWDL 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g03566 274 Pfam No apical meristem (NAM) protein 13 137 IPR003441 GO:0003677|GO:0006355
Arst10g03566 274 Gene3D NAC domain 21 166 IPR036093 GO:0003677|GO:0006355
Arst10g03566 274 ProSiteProfiles NAC domain profile. 12 162 IPR003441 GO:0003677|GO:0006355
Arst10g03566 274 SUPERFAMILY NAC domain 9 163 IPR036093 GO:0003677|GO:0006355
Arst10g03566 274 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 11 219 - -
Arst10g03566 274 FunFam NAC domain-containing protein 100-like 21 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g03566 Arst-Chr10 103540411 103542222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g03566 10 204 NAC Transcription Factor Family AT5G18270 72.362 2.97e-101 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Arst10g03566 NAM 9.2e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g03566 - - aip:107623055 521.546