Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g03550 ATGGAAATTGAATTCCAGCAAGCAAAGCAGTACTCAGTGAAAGATTCCAGCAAGCAAAAAGCAAGAAAAAGAAACAAGAAGAGTAGTAAGTTTGTTGGAGTGAGACAGAGAGCTTCAGGGAGATGGGTAGCTGAGATCAAAGACACAACGCACAACATCAGAATGTGGCTTGGCACTTATCAGACTGCAGAGGAAGCGGCCAGAGCCTACGACGAAGCCGCGCGTCTTCTTCGCGGCTCCGCTGCTCGGACCAACTTCATCACTCATCATTTCTCGTCGTCCTTGGATTCTCCTGTCGCTTCCCGGATTCGGAATCTTTTGAACAGCAAAAAGGGAATCAGCAGCAGTGATGAGATCATTGAGAACTCATCATCATCATCATCGCTTTCGAGTTCGAGTGAGACAATTGTTACAGAAAGCACACCAACAATTCTATCTGATGATAATGCTTATAGACCAGATTTGAGTAGTTTTGAAAGACAAGTATCAGGTTCAGGTTCAGGTTCTGGTTCACCTTATGCAATTCATGGGGTTCATGGATTCATGGATGCTTTTCAAGTTAAGGACTCTAACGAATCTCTCTGGGATCTTCCACCTTTGATGAGCTCGTTTTTCCCTTAA 621 0.4444 MEIEFQQAKQYSVKDSSKQKARKRNKKSSKFVGVRQRASGRWVAEIKDTTHNIRMWLGTYQTAEEAARAYDEAARLLRGSAARTNFITHHFSSSLDSPVASRIRNLLNSKKGISSSDEIIENSSSSSSLSSSSETIVTESTPTILSDDNAYRPDLSSFERQVSGSGSGSGSPYAIHGVHGFMDAFQVKDSNESLWDLPPLMSSFFP 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g03550 206 PRINTS Ethylene responsive element binding protein signature 53 69 IPR001471 GO:0003700|GO:0006355
Arst10g03550 206 PRINTS Ethylene responsive element binding protein signature 31 42 IPR001471 GO:0003700|GO:0006355
Arst10g03550 206 MobiDBLite consensus disorder prediction 1 31 - -
Arst10g03550 206 FunFam ethylene-responsive transcription factor RAP2-11 29 88 - -
Arst10g03550 206 CDD AP2 29 86 IPR001471 GO:0003700|GO:0006355
Arst10g03550 206 ProSiteProfiles AP2/ERF domain profile. 30 87 IPR001471 GO:0003700|GO:0006355
Arst10g03550 206 SUPERFAMILY DNA-binding domain 29 87 IPR016177 GO:0003677
Arst10g03550 206 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 13 145 - -
Arst10g03550 206 MobiDBLite consensus disorder prediction 118 141 - -
Arst10g03550 206 Gene3D AP2/ERF domain 29 88 IPR036955 GO:0003700|GO:0006355
Arst10g03550 206 Pfam AP2 domain 29 79 IPR001471 GO:0003700|GO:0006355
Arst10g03550 206 SMART rav1_2 30 93 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g03550 Arst-Chr10 103474286 103475148 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g03550 16 206 AP2-EREBP Transcription Factor Family AT5G19790 36.111 3.42e-35 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Arst10g03550 AP2 4.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g03550 K09286 - qsa:O6P43_009860 154.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst10g03550 10 103474286 103475148 Arst10g03550 10 103474286 103475148 ECH
Arst10g03550 10 103474286 103475148 Arst10g03550 10 103474286 103475148 PCT