Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g03501 ATGGCTTCCTCTAACTATCAACAAAACGACTATTCTCCTTCTAATTCTCCTGTGATCCGTTTCTTTAAGGTTATCCTCGGAAAAACTCTTCAAGATGAAAACTTTAAGTTACCAAAAAAGTTCACTAGAAAATATGGTTCTAACCTATCAAACCCATTGTATCTTAAGCCTCCAGATGGTACTGAATGGAGAGTAGATTGGATCATTCATGATGGTGGAATTTTGTTTAAAGAAGGTTGGAAAGAGTTTGTTGCATATTACTCTCTTGATGATGGCCATGTGTTACGGTTTGAGTATAATATTGGAACTTCTCACATTGAAGTACAAATATCTGACATGAGTGGCCTCCAAATAAAATATCCTGTCAATGATCAGATCAAAGAGCACCCGCCACAACACAGGGTCGAGCCGGTGGAAAGGCCAAAAGAACAACAAACTAGAGATGTGGATAGCAGTCCCAACACTCAAAACATGAGACTTAACGAGGTACGGCAGAAGAAAATATCGAATGAACCACTGCTAGGAGTCCGGGGCCAATTAAGGAAAAAACTGAGAGCACCAGTGTCATCTGCTTCTAAAGGTAGACAGTTGGAAAATGACACACAAATCAGGGAAGGTATTAAATTTGAAAAGAAAAACCATAAGATGCCAGTGTCTATCAATCAAGATTCTAATGGCAAAAGAAATAGAAAAAGCAAAGATTTTGAATCTTCTGTTAGTCCCTGTCTTGCAAGACCTGAATCTCTGAAAAAAGCTAAGAAGTTCAAGTGGGAAAAGCCCTCTTTCATCATCAAGATAAAACAACTGTCTCAAATGAGAGCACCACGTTACTTTCCAACTAAATTCTTCAGGAAGTATTTTGTAAATAATCCACAAAATGCTAATATAAGGTTTGGAAAGAAGTTGTTCCCTGTTAAGTTGATCTATAGGCCATCATCATGTGATGCCTTTATGTCTGCTGGTTGGAACTTTTTTGCTCGAGCTAGTAAATTACAAGCCGGAGATGTTTGTTTGTTTAAGCTCGTCAATAGAAAAGATCCGGTGTTTGATGTTCATATTTGTCGTCGACAACGCCGTGAGTCATTTTCCAAATCAGTGACTCATGAGATTCAGCTCCTGAAAGAAGTTACGGAGATCAATTCACAGAATCCCTCTTTCATGGTCAAGATAAAAGACAGTGATCCAAGAAGATCAAGGCCTTACTTATCAGCTATCTTCTACAGAAAATATTTTAAAAAGAATCAGCAGAATGTAAAGTTACAGTTCGGAAAGGAGTTGTGGCCTGTTACGATAATCTACAATCCGTCATCAAGAAACACCTTTATTTCGGCTGGTTGGAGCTCTTTTGCTAGAGCAAATAAATTAGAAGCTGGAGATGTTTGTGTTTTTGAGCTCATCAATAAAAAAGATCTGTTTAATGTTCATGTCTGTAGAGTCCAATGCTAG 1446 0.3797 MASSNYQQNDYSPSNSPVIRFFKVILGKTLQDENFKLPKKFTRKYGSNLSNPLYLKPPDGTEWRVDWIIHDGGILFKEGWKEFVAYYSLDDGHVLRFEYNIGTSHIEVQISDMSGLQIKYPVNDQIKEHPPQHRVEPVERPKEQQTRDVDSSPNTQNMRLNEVRQKKISNEPLLGVRGQLRKKLRAPVSSASKGRQLENDTQIREGIKFEKKNHKMPVSINQDSNGKRNRKSKDFESSVSPCLARPESLKKAKKFKWEKPSFIIKIKQLSQMRAPRYFPTKFFRKYFVNNPQNANIRFGKKLFPVKLIYRPSSCDAFMSAGWNFFARASKLQAGDVCLFKLVNRKDPVFDVHICRRQRRESFSKSVTHEIQLLKEVTEINSQNPSFMVKIKDSDPRRSRPYLSAIFYRKYFKKNQQNVKLQFGKELWPVTIIYNPSSRNTFISAGWSSFARANKLEAGDVCVFELINKKDLFNVHVCRVQC 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g03501 481 SMART B3_2 21 114 IPR003340 GO:0003677
Arst10g03501 481 SMART B3_2 262 357 IPR003340 GO:0003677
Arst10g03501 481 SMART B3_2 386 480 IPR003340 GO:0003677
Arst10g03501 481 MobiDBLite consensus disorder prediction 198 217 - -
Arst10g03501 481 SUPERFAMILY DNA-binding pseudobarrel domain 257 356 IPR015300 -
Arst10g03501 481 Gene3D - 15 115 IPR015300 -
Arst10g03501 481 ProSiteProfiles B3 DNA-binding domain profile. 20 114 IPR003340 GO:0003677
Arst10g03501 481 MobiDBLite consensus disorder prediction 148 163 - -
Arst10g03501 481 MobiDBLite consensus disorder prediction 129 147 - -
Arst10g03501 481 Gene3D - 244 358 IPR015300 -
Arst10g03501 481 Gene3D - 367 480 IPR015300 -
Arst10g03501 481 PANTHER B3 DOMAIN-CONTAINING 268 475 - -
Arst10g03501 481 CDD B3_DNA 384 478 IPR003340 GO:0003677
Arst10g03501 481 ProSiteProfiles B3 DNA-binding domain profile. 303 357 IPR003340 GO:0003677
Arst10g03501 481 Pfam B3 DNA binding domain 392 479 IPR003340 GO:0003677
Arst10g03501 481 Pfam B3 DNA binding domain 276 357 IPR003340 GO:0003677
Arst10g03501 481 Pfam B3 DNA binding domain 30 108 IPR003340 GO:0003677
Arst10g03501 481 SUPERFAMILY DNA-binding pseudobarrel domain 379 479 IPR015300 -
Arst10g03501 481 CDD B3_DNA 20 112 IPR003340 GO:0003677
Arst10g03501 481 MobiDBLite consensus disorder prediction 182 239 - -
Arst10g03501 481 MobiDBLite consensus disorder prediction 129 168 - -
Arst10g03501 481 SUPERFAMILY DNA-binding pseudobarrel domain 15 114 IPR015300 -
Arst10g03501 481 ProSiteProfiles B3 DNA-binding domain profile. 427 480 IPR003340 GO:0003677
Arst10g03501 481 CDD B3_DNA 260 355 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g03501 Arst-Chr10 103147695 103150941 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g03501 383 471 B3 DNA Binding Superfamily AT3G18990 37.778 1.40e-08 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Arst10g03501 B3 3.1e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g03501 - - adu:107471893 730.324