Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g03317 ATCAGGCTGATTTCACATGCCGGCGCCAATTACGTTGGGTCAATGTCGAAATCGATCACGCATCTGATTTGTTGGAAGTTTGAGGGAAGAAAGTATGAGATTGCCCAAAAGTTTGATATAATTATAGTCAATCATCGATGGATTGAAGACTGCATTAAAGAAGGAAGGCGTGTGCCAGAAGAGTCATATATCTTGCAAAGTGGACATGAAGTTGGGCCATTGTTACTGGAAGTTCCAATCAGTGTTCCAGCAACTAGATTGACAAAAAATAAAGTTATAACTGATCAAATATATGATATTGACTCTGGAGAGCAAACAACTGAGATCAGTTTTGGAGCTTCAGAAAATTTTGTTTGGGAAGATTTAAATACAAAGCATGACAAGTCCAGTGCTTATCCTTCTAGACGGTCAAGGAAAGGAAAAAGAAGTATCTGTGCTGGTAATAATGGAGGTTGTACTGTGGCTGAACCTTCTCGTAAAGGCAGAAGGATTGTAAACAATATTGTTGATGAAGTGGTGTTGGACCCTTTATTGGATGTGGTCCCGGACAACCACCATAATAGATGGGATAGACGAAACCATGATGCTGCAGCTACCACTAGCCTTTGTAGTGGTGTCAATAAGGGAAATACAGTTGAAAATGGAGAAACAACAGATGCCGGATTGTCTACTCAAAATGAAACTATCAATGGAACTTCAGATAGCATTGAAGAGATCAATCATTCGAACAATGTATCAGCTCTTAGAAGTTCAACTTTCTCTGTAGAGTATCATCTACCTATGACTCAAATGTCAACAGATATATGTTCTTCTGCTGAAAAGTTCACAGATGATTGTCAGCATGAAGATGTTGCTGGCTTACCTACATCCAGTGAGTTATCCTGTGTTATCTGTCACGCAGATTTCAGCGCAACAAGGGGAATTCTTCCATGTGGACATCGATTTTGTTTTGAATGCATTCATAGTTGGGCTAATCATAGGACTTCAACGAGGAAAAATGCAACCTGTCCTTTGTGCAAGGCAAGTTTTCAGTCGATCAAGAAGGTTGAGCATGCAGATAGAATTGATCAAAAAGTATACACCCAGACAGTCCCATGTAACAATTCAGCTGAAGATGTTTTTATCGCTCCACATCAAGGATTGCCCGATTACCCTTTTGAGTCCTCAGAGGCAAACTCTTGTGTAGTTTGTGGTGGTTTGGAACCAGAGGATCTCCTTGACAGGTGTGATATCTGCCAAACACGAAGAATCCATATATATTGCCTGGACCCTCCTATAACTCCATGGATATGCAATCCCTGCAACCAACTACGGAGAAGTTACTATGATCGCTCGTATTAA 1341 0.4049 IRLISHAGANYVGSMSKSITHLICWKFEGRKYEIAQKFDIIIVNHRWIEDCIKEGRRVPEESYILQSGHEVGPLLLEVPISVPATRLTKNKVITDQIYDIDSGEQTTEISFGASENFVWEDLNTKHDKSSAYPSRRSRKGKRSICAGNNGGCTVAEPSRKGRRIVNNIVDEVVLDPLLDVVPDNHHNRWDRRNHDAAATTSLCSGVNKGNTVENGETTDAGLSTQNETINGTSDSIEEINHSNNVSALRSSTFSVEYHLPMTQMSTDICSSAEKFTDDCQHEDVAGLPTSSELSCVICHADFSATRGILPCGHRFCFECIHSWANHRTSTRKNATCPLCKASFQSIKKVEHADRIDQKVYTQTVPCNNSAEDVFIAPHQGLPDYPFESSEANSCVVCGGLEPEDLLDRCDICQTRRIHIYCLDPPITPWICNPCNQLRRSYYDRSY 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g03317 446 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 285 378 IPR013083 -
Arst10g03317 446 SUPERFAMILY BRCT domain 2 66 IPR036420 -
Arst10g03317 446 Pfam twin BRCT domain 2 47 IPR001357 -
Arst10g03317 446 MobiDBLite consensus disorder prediction 127 152 - -
Arst10g03317 446 ProSiteProfiles BRCT domain profile. 1 65 IPR001357 -
Arst10g03317 446 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 384 445 IPR013083 -
Arst10g03317 446 ProSitePatterns Zinc finger RING-type signature. 311 320 IPR017907 -
Arst10g03317 446 ProSiteProfiles Zinc finger RING-type profile. 295 340 IPR001841 -
Arst10g03317 446 Gene3D BRCT domain 1 70 IPR036420 -
Arst10g03317 446 SUPERFAMILY RING/U-box 288 346 - -
Arst10g03317 446 SMART ring_2 295 339 IPR001841 -
Arst10g03317 446 SUPERFAMILY FYVE/PHD zinc finger 382 437 IPR011011 -
Arst10g03317 446 Pfam Ring finger domain 294 340 IPR001841 -
Arst10g03317 446 PANTHER F5A8.9 PROTEIN 116 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g03317 Arst-Chr10 101763396 101767655 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g03317 19 71 Core DNA Replication Machinery Family AT4G02110 53.704 2.15e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g03317 - - adu:107471428 923.309