Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g03303 ATGGCACACTTCCAAAGTCCCGAACCAAAGACACACTCGTTTGCGTACTGCTTCTGCCTCAGTTCCTTCCTCTGCAACCACCTCTCCAGTCCTCTCTCTCTTTCTCTCTCACTCTGCTTCACGTCTCCCTGCCGCCAGCACCTCTCTTCCGCTGTCACCGTCGCCATCTTCCTGCAGGATTCAGACTACAAGGACAGTTTAAGTTCTACACTGGATACCAATATCTTGATAAATTATAATCATCCTAATTTTTTTAGGCTTTGCTGTAAGAAAGAAGGGAAGGAACAATTAATCATGGGTTGGGGTCACATTGGAAGAAATGGCGGTGATGAAGCTGGTCCTAGCAGCACCGTCCCCACAACCACCGAGCCACGGCGGTTCCCACTGGCTGCTCAGCCGGAGATGATGCGTGCTGCTGAGAAGGAGTACAAGGGTTGCTGTTGCTTATCAAAACGAGACAAAACTCTTGGGACAAATGTTGTACTATGTTCTCACAACAGGATCAGGGCAGCAGACACTTGGGGAGGAGTACTGCGACATCACTCAGGTTGCTGGTCCTTATGGGCTGCCTCCTACCCCTGCAAGGCGTACTCTTTTCATTGTATACCAGACAGCGATTCCTTATATTGCAGATCGTATTAGTTCACGAATTGCTTCCCGTGGCATTGCCCTCGCTGATTCAGAGTTTGCGGAGAGTTATGGTGATAGTGCTATCAGGAGCAGTAATTCACAGGATTCTGTGGCTAGTCCTTCAACATCAGGACAACATAGTACAACTCTTTCAAGATTGAAGCAAAAACTGAGTGGTTTTTGGTTGCATGTGGTTCAGCAATGGCCTGCGATGCTCCCTTTTGTACGTGAATTGATACAGCTGGTTCTTCGTGCTAATCTAATGCTGTTCTACTTTGAAGGCCTTTATTATCATATATCCAAGCGTGCTGCAGGCATTCGTTATGTTTTCATTGGAAAACCATCAAATCAAAGACCCAGATACCAAATACTAGGAGTATTTCTGCTGATTCAACTTTGTGTAATAGCTGCGGAACGGCTACGTCGAAGAAATTTATCTTCAATTGCTGGCTCAGTTCATCAGGCATCCTTTGCAACCCAACAGAGATCAGCAGGACATGGTTTGCCTGTTCTGAATGAAGAAGGTAATCTGGCATCTCTAGATACTGACGAAGGAGGTTGGGTCTTTGATTCTTCATCTTCTGAGTATGGAACTAGCAAATGCACTCTTTGCCTAAGTAATCGTCAACATCCAACAGCTACATCCTGTGGCCATGTATTTTGCTGGAACTGTATCACAGAATGGTGCAATGAAAAGCCAGAATGTCCTCTTTGCCGCACCCCAATAACACATTCAAGTCTAGTTTGTGTGTATCATTCAGACTTCTAG 1399 0.4582 MAHFQSPEPKTHSFAYCFCLSSFLCNHLSSPLSLSLSLCFTSPCRQHLSSAVTVAIFLQDSDYKDSLSSTLDTNILINYNHPNFFRLCCKKEGKEQLIMGWGHIGRNGGDEAGPSSTVPTTTEPRRFPLAAQPEMMRAAEKDEQYASFVYEACRDAFRHLFGTRVAVAYQNETKLLGQMLYYVLTTGSGQQTLGEEYCDITQVAGPYGLPPTPARRTLFIVYQTAIPYIADRISSRIASRGIALADSEFAESYGDSAIRSSNSQDSVASPSTSGQHSTTLSRLKQKLSGFWLHVVQQWPAMLPFVRELIQLVLRANLMLFYFEGLYYHISKRAAGIRYVFIGKPSNQRPRYQILGVFLLIQLCVIAAERLRRRNLSSIAGSVHQASFATQQRSAGHGLPVLNEEGNLASLDTDEGGWVFDSSSSEYGTSKCTLCLSNRQHPTATSCGHVFCWNCITEWCNEKPECPLCRTPITHSSLVCVYHSDF 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g03303 485 PANTHER PEROXISOME ASSEMBLY PROTEIN 10 128 483 IPR025654 GO:0005778|GO:0007031|GO:0008270|GO:0016558
Arst10g03303 485 CDD RING-HC_PEX10 429 480 - -
Arst10g03303 485 Pfam Pex2 / Pex12 amino terminal region 142 372 IPR006845 -
Arst10g03303 485 ProSiteProfiles Zinc finger RING-type profile. 431 469 IPR001841 -
Arst10g03303 485 Pfam Zinc finger, C3HC4 type (RING finger) 429 474 - -
Arst10g03303 485 FunFam Peroxisome biogenesis factor 10 410 482 - -
Arst10g03303 485 SUPERFAMILY RING/U-box 424 474 - -
Arst10g03303 485 ProSitePatterns Zinc finger RING-type signature. 446 455 IPR017907 -
Arst10g03303 485 SMART ring_2 431 468 IPR001841 -
Arst10g03303 485 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 417 482 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g03303 Arst-Chr10 101615192 101620932 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g03303 427 481 C3H Transcription Factor Family AT4G28270 32.394 9.74e-10 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g03303 K13346 - gmx:100783914 670.618