Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g03274 ATGGACTTGGGAGATGAAACCGACATCTCTCAACCCTACACCCAAGAGGACGGCGACCCCCACCTCGTCGGCTTCATCAACGCCAACATCGTCGGCCTCCGCTACTACTCCGGCACCGTCAACGGCCGCGAAATGGTCGCCCTCCTCCGCGAACCCCTCAACCCTCACGACCCCAACGCCATCAAAGTCCTCAACACCCGCTCCATCCAGGTCGGTCACATCGATCGCACCGTAGCCGCCGCGCTTTCCCCTCTCATCGACTCTGAACTCATCACCGTCGAGGCCATTGTCCCCAACCGCCGCTCCAAGACCAACAGCTTCCGCCTCCTCTGCCAAATCCACATCTTCGCCCCTCTCCCTTCGTTCCCCACTGTCATTGAGCTCATCTCCGAGAGAGGCCTACACCTCATAACCCAAAACGACGCCTCCTTTACGTTATCGGAGTCCGTTGCCGTTAAAGAAACCCGCGCTGATTCGAGGTTCAAGACTGTGGACGAGATTTTCAGGCTTGTTGATGAGAGCTTGACGGTCAAGGAGCGTGTGTCTCACGCGCTTGAGCCTCCCGAGAGCATTGTGAGGTCGAAGCTGATGGAGCACCAGAAGGAAGGGGTGTGGTGGCTACTCAACAGAGAGAAAAGCGAGGAGCTTCCACCGTTTTGGGAGGTGGGAGAAGGGGGCGAGTTTGTCAACGTGTTGACCAATTACAGCACGTGCGTTAAGCCAGAGCCTTTGAGGGGAGGGATCCTGGCCGATGCAATGGGGCTCGGGAAGACTCTCACTTTGCTCTCTCTTATTGCCCTTGACAAGGTTTCCGGTCAGAGGAAGGGAAAGAAGAGAAGAAAGATTGAGATTGGGGAGAGCAGTGCAACGCTTGTAGTGTGCCCTCCCTCTGTGTTTTCGACATGGATTTCGCAATTGGAAGAACACACTGTGCCTGGTTCACTCAGGACTTGCATGTATTATGGTGACAAGCGGGCTAAGAATGCTGAGGACCTCATGGATTATGATTTGGTGCTCACTACTTACTCTACACTCTCCGTGGAGGAGGATGACCCCAACTCGCCGGTGAAGAAAGTGGTGTGGAGGAGGATCATATTGGATGAGGCTCACACTATCAAGAATTCAAATGCCCGGCAGAGCAAGATGGTTATTAGTCTCAATGCCAAGAGGAGGTGGGCTGTCACCGGCACACCTATTCAGAATGGTTCCTTGGACTTGTTTTCCCTCATGGCTTTCCTGCATTTTGAGCCCTTCTCCATAAAGAGCTATTGGCGCAGCCTTGTGCAACGGCCTCTTAATCAGGGCCTTCAGAGCGGCCTCTCACGCCTCCAGGTTTTGATGGCGGCAATTTCGTTAAGAAGAACAAAAGATAATGGATTGTTAGGGGTGCCACCAAAAACTATTGAGACTCAATATGTTGAACTTAATTCAGAAGAACGTGAATTGTATGATCGGATGAAAGAGGAAGCGATGCTTTTAATGAGGAGTTTTACCAATGGAACTAACAATTTTCCTGTTGTACTAAGTATGCTTTTGCGTCTTCGCCAAATCTGTACTGATTCAGCATTGTGCCCCAGTGATCTCGCAACGACATTCCGTTCAACTAATCTTGAAGATGTTTCCAATAACCCAGAGTTGTTGCAAAAGTTAGTTGAGATGTTGCAAGAATGTGAAGATTACGAGTGCCCAATTTGCATTTCTCCTTCAGCGGACATCATTATCACCAGCTGTGCTCACATCTTCTGCCGACTCTGTATTCTGAAATCTCTACAATCCAGCAGATCCCGTTGTCCTCTTTGCCGTCAAGCTCTATCTGAATCTGACTTGTTCTCAGCCCCAATCGAGCCTTCTAAAGCTGATAGTACCTCTTCATCCTCATCATCGGATAAAAAGTTATCTTCCAAAACATCTGCTTTGATAAAATTTCTCAAAGAATCAAGAGAACAGAAGCCAACAGCAAAATCGGTAGTGTTTTCACAATTTCGCAAGTTGTTATTGTTATTGGAGGCGCCTTTGATGGAGGCTGGTTTCAAGACTTTGCGCATTGATGGCTCGATGACAGTTAAACAGAGGGCTAATGTTATTGATCAATTTCAAGACAATAAAGAAAACGGACCGACCGTTCTGCTTGCAAGCCTTAGGGCTTCAGGTGCAGGTATAAATCTCACAGCCGCCACCACGGTGTATTTCATGGAGCCATGGTGGAATCCGGCTGTTGAGGAACAGGCAATGGATCGCATCCATCGTATTGGACAGAAAGAGGCGGTGAAGATTGTTAGATTGGTTGTTCTGGACAGCATTGAGGAAAAGATACTGCTGTTGCAGGAGAAGAAGAGGGAATTAGCAAGAGAAACATTTAACAAGAGGGGAAGTGATTCTGGTGGCATGAACTATAAAGATCTAAGTTTCCTTATGTCCATAGAATGA 2427 0.4883 MDLGDETDISQPYTQEDGDPHLVGFINANIVGLRYYSGTVNGREMVALLREPLNPHDPNAIKVLNTRSIQVGHIDRTVAAALSPLIDSELITVEAIVPNRRSKTNSFRLLCQIHIFAPLPSFPTVIELISERGLHLITQNDASFTLSESVAVKETRADSRFKTVDEIFRLVDESLTVKERVSHALEPPESIVRSKLMEHQKEGVWWLLNREKSEELPPFWEVGEGGEFVNVLTNYSTCVKPEPLRGGILADAMGLGKTLTLLSLIALDKVSGQRKGKKRRKIEIGESSATLVVCPPSVFSTWISQLEEHTVPGSLRTCMYYGDKRAKNAEDLMDYDLVLTTYSTLSVEEDDPNSPVKKVVWRRIILDEAHTIKNSNARQSKMVISLNAKRRWAVTGTPIQNGSLDLFSLMAFLHFEPFSIKSYWRSLVQRPLNQGLQSGLSRLQVLMAAISLRRTKDNGLLGVPPKTIETQYVELNSEERELYDRMKEEAMLLMRSFTNGTNNFPVVLSMLLRLRQICTDSALCPSDLATTFRSTNLEDVSNNPELLQKLVEMLQECEDYECPICISPSADIIITSCAHIFCRLCILKSLQSSRSRCPLCRQALSESDLFSAPIEPSKADSTSSSSSSDKKLSSKTSALIKFLKESREQKPTAKSVVFSQFRKLLLLLEAPLMEAGFKTLRIDGSMTVKQRANVIDQFQDNKENGPTVLLASLRASGAGINLTAATTVYFMEPWWNPAVEEQAMDRIHRIGQKEAVKIVRLVVLDSIEEKILLLQEKKRELARETFNKRGSDSGGMNYKDLSFLMSIE 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g03274 808 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 238 416 IPR014001 -
Arst10g03274 808 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 156 805 - -
Arst10g03274 808 CDD SF2_C_SNF 638 762 - -
Arst10g03274 808 SMART helicmild6 666 751 IPR001650 -
Arst10g03274 808 Gene3D - 464 573 IPR027417 -
Arst10g03274 808 SUPERFAMILY RING/U-box 545 607 - -
Arst10g03274 808 Gene3D - 232 455 IPR038718 -
Arst10g03274 808 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 574 609 IPR013083 -
Arst10g03274 808 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 455 806 IPR027417 -
Arst10g03274 808 Coils Coil 764 784 - -
Arst10g03274 808 SMART ultradead3 192 430 IPR014001 -
Arst10g03274 808 Pfam Helicase conserved C-terminal domain 635 751 IPR001650 -
Arst10g03274 808 SMART ring_2 562 600 IPR001841 -
Arst10g03274 808 Pfam Zinc finger, C3HC4 type (RING finger) 559 605 - -
Arst10g03274 808 ProSiteProfiles Zinc finger RING-type profile. 562 601 IPR001841 -
Arst10g03274 808 ProSitePatterns Zinc finger RING-type signature. 577 586 IPR017907 -
Arst10g03274 808 SMART HIRAN_2 23 119 IPR014905 GO:0003676|GO:0008270|GO:0016818
Arst10g03274 808 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 167 452 IPR027417 -
Arst10g03274 808 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 638 802 IPR001650 -
Arst10g03274 808 Pfam SNF2-related domain 199 521 IPR000330 GO:0005524|GO:0140658
Arst10g03274 808 Gene3D - 14 136 - -
Arst10g03274 808 Pfam HIRAN domain 24 114 IPR014905 GO:0003676|GO:0008270|GO:0016818
Arst10g03274 808 Gene3D - 610 801 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g03274 Arst-Chr10 101322866 101326334 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g03274 11 807 RAD5 or RAD16-like Gene Family AT5G05130 56.480 0.0 944
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Arst10g03274 SNF2_N 2.5e-74 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g03274 K15711 - fve:101311093 946.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst10g03274 10 101322866 101326334 Arst10g03274 10 101322866 101326334 ECH