Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g03232 ATGGATAACGAGATCGACGTTCCTCCGTTCTTTCTCTGCCCAATCTCGCTTGAAATCATGAAGGATCCAGTAACCGTCTCCACCGGCATCACCTACGACAGAGAGAGCATCGAGACATGGCTCTTCTCCGCCAAGAACAACACCTGCCCCGTAACCAAGCAACAACTATCTTCTTCTGATTTCTCCGATCTAACTCCAAACCACACTCTTCGCCGATTGATTCAGTCATGGTGTACCATCAACGCTTCCTACGGCATCCAAAGGATTCCCACACCTAAACCACCGGTCAACAGAAACCAGATCTCAAAGCTCCTCAAAGATGCTTCCCGTTCCACCACCGTCAACCAGATCAAGTGTCTCAGAAAGCTCAAATCCATTGCTTCTGGAAGCGAAACAAACAAAAGGTGCATGGAAGCTGCTGGTGCCGTTGACTTCTTGGCTTCCGTTGTCAACAACAACATCGATTGTTCTTCTTCTGATCATCACGACGACGATGATGATGATGAAGCTTTGAAGAATAGTCCCTCCGATGAAGCACTAAGCATGCTCTACAATCTTCATGTATCCGAAGCTGGATTGAAGAATCTCATAGGATTCAAGAACGGAGAGTTTGTGAATTCTCTAACGAGGATTTTGCAGAAAGGAACATACGATTCAAGAGCTTACGCAGTTTTCATGCTGAAATCAATGTGTGAGGTGGCTGAACCGGTTCACCTTCTTCACTTAAGAACCGAGTTATTCGTGGAGCTAGTTCAGGTTTTGAAGGACCAGATTTCTCACAAGGCAACAAAAGCCGCCCTCCACGCTCTGATCCAGATCTCTTCGTGGGGGAGAAACAGGATCAGAGCGGCAGAGGCCGGCACAGTTGCCGTTCTCGTGGAGCTTCTTCTCGAAACTAAAGAGAGGAAGCCCTGCGAGATGATGCTAGTTTTGTTAG 937 0.4749 MDNEIDVPPFFLCPISLEIMKDPVTVSTGITYDRESIETWLFSAKNNTCPVTKQQLSSSDFSDLTPNHTLRRLIQSWCTINASYGIQRIPTPKPPVNRNQISKLLKDASRSTTVNQIKCLRKLKSIASGSETNKRCMEAAGAVDFLASVVNNNIDCSSSDHHDDDDDDEALKNSPSDEALSMLYNLHVSEAGLKNLIGFKNGEFVNSLTRILQKGTYDSRAYAVFMLKSMCEVAEPVHLLHLRTELFVELVQVLKDQISHKATKAALHALIQISSWGRNRIRAAEAGTVAVLVELLLETKERKPCEMMLVLLEVLCQCAEGRAELLSHGAGLAIVSKKILRVSTMANDRAVRILLSVAKFSATPVVVQEMLKLGVVAKLCLSLQVDSGSKTKEKAREILKIHAKAWKNSPCIPTNLASAYPAFA 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g03232 424 FunFam RING-type E3 ubiquitin transferase 1 87 - -
Arst10g03232 424 Gene3D - 96 411 IPR011989 -
Arst10g03232 424 ProSiteProfiles U-box domain profile. 6 84 IPR003613 GO:0004842|GO:0016567
Arst10g03232 424 Pfam U-box domain 7 79 IPR003613 GO:0004842|GO:0016567
Arst10g03232 424 SUPERFAMILY RING/U-box 4 83 - -
Arst10g03232 424 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 87 IPR013083 -
Arst10g03232 424 SMART Ubox_2 10 77 IPR003613 GO:0004842|GO:0016567
Arst10g03232 424 CDD RING-Ubox_PUB 8 61 IPR045210 -
Arst10g03232 424 PANTHER WDSAM1 PROTEIN 4 413 IPR045185 GO:0061630
Arst10g03232 424 SUPERFAMILY ARM repeat 101 389 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g03232 Arst-Chr10 100874242 100875281 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g03232 1 422 U-box Gene Family AT3G52450 56.208 2.65e-180 508
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g03232 - - aip:107624094 685.641