LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst10g03211	ATGAACGACTTGCTCTCTCCACCGCGGGACAAGAACCAGCATGTCATCGAGATGGCGGAAACGACGCCGTCCGTCGAGAACAACCTCAACAAGTTCTTCGAGGAAGTTGAGTCCCTAAAACAAGAGCTGAAAGAGCTCGAGAACATCCACAACAGCCTCCGAGTCTCCAACGAGAAGAGCAAGGCTCTCCACACCGCAAAGGATGTGAAGGACCTTCGCTCTCGTATGGATGCTGATGTCACCACCGCCCTCAGGAAGGCCAGGGTCCTCAAGGCCCGCTTGGAGGCCCTTGACCGGGCTAACGAGGCTAGTCTGTCCGTCCCTGGCTGCGGGCCTGGCTCTTCCTCTGACCGGACACGGACGTCTGTGGTGAATGGACTGAGAAAGAACCTCAAGGAGTCAATGGAGAGTTTCAACAAACTGAGAGATCAGATATCGTCGGAGTATAGAGATACCGTACAACGTCGGTACTACACCGTCACCGGCGAGAATCCTGATGACAAAACCATTGACCTTCTCATCTCTACCGGTGAGAGTGAAACTTTCCTCCAGAAAGCAATCCAACAACAAGGGAGAGCGACAGTGATGAACACAATTCAAGAGATTCAGGAGAGGCACGGTGCGGTGAAAGAGATAGAGAGGAACCTGAAGGAGCTTCACCAGGTGTTCTTGGACATGTCAGTGTTGGTCCAAACACAGGGTGAACAGCTCGACGACATTGAGAGCCACATGGCACGTGCTAATTCGTACGTTAGGGGTGGTGTACAGCAACTCCAAGTTGCTAGAAAGCACCAGAAGAACACCCGCAAGTGGACCTTTATTGCCATCATATTGCTTCTCATAATCGCCTTGGCTATAATTCTTCCCATAGTTTTGAGAAACTGA	885	0.5153	MNDLLSPPRDKNQHVIEMAETTPSVENNLNKFFEEVESLKQELKELENIHNSLRVSNEKSKALHTAKDVKDLRSRMDADVTTALRKARVLKARLEALDRANEASLSVPGCGPGSSSDRTRTSVVNGLRKNLKESMESFNKLRDQISSEYRDTVQRRYYTVTGENPDDKTIDLLISTGESETFLQKAIQQQGRATVMNTIQEIQERHGAVKEIERNLKELHQVFLDMSVLVQTQGEQLDDIESHMARANSYVRGGVQQLQVARKHQKNTRKWTFIAIILLLIIALAIILPIVLRN	294

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst10g03211	294	Gene3D	-	25	154	-	-
	Arst10g03211	294	CDD	SNARE_syntaxin1-like	198	259	-	-
	Arst10g03211	294	Pfam	Syntaxin	31	234	IPR006011	GO:0016020
	Arst10g03211	294	Gene3D	-	188	292	-	-
	Arst10g03211	294	ProSiteProfiles	t-SNARE coiled-coil homology domain profile.	199	261	IPR000727	-
	Arst10g03211	294	FunFam	Syntaxin 132	192	292	-	-
	Arst10g03211	294	FunFam	Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group	26	156	-	-
	Arst10g03211	294	CDD	SynN	29	186	IPR006011	GO:0016020
	Arst10g03211	294	ProSitePatterns	Syntaxin / epimorphin family signature.	205	244	IPR006012	GO:0005484\|GO:0006886\|GO:0016020
	Arst10g03211	294	PANTHER	SYNTAXIN	41	281	IPR045242	-
	Arst10g03211	294	SMART	SynN_4	24	150	IPR006011	GO:0016020
	Arst10g03211	294	SMART	tSNARE_6	194	261	IPR000727	-
	Arst10g03211	294	Coils	Coil	29	56	-	-
	Arst10g03211	294	Pfam	SNARE domain	235	287	IPR000727	-
	Arst10g03211	294	Coils	Coil	124	148	-	-
	Arst10g03211	294	SUPERFAMILY	t-snare proteins	27	254	IPR010989	GO:0016020\|GO:0016192

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst10g03211	Arst-Chr10	100581191	100583920	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst10g03211	28	272	SNARE and Associated Proteins	AT3G11820	71.020	1.05e-129	369

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst10g03211	K08486		-	gmx:100808718	419.853