Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g03209 ATGGCTGCTGCTACAGCTTCTGTTTCCTCTTCTTCTTCTATCTGCAACAGAATCTACAACCCCACCTTCACCCACACTTCCATTTCACTCACCACCAACTTCCCTCAGAGACCCATCTCCTACAAACCCCTCACCTTCAACCTCAAGCCCCAAAGTTTCAATCTTTTCCCTCTCCCTCTTCACCCTTCCTCCGCTGCATTCGATGGATTCGAAGCCTCTCAAGAACAAGAACAAGAAGAGACCTCTGAAACACCCCAACAACAAGAAGAGCAAAGGGTTTCAGATTCCAACGACTCTGGGAGGCTCTATGTTGGAAACTTGCCATATTCAATGACCTCCAACGAATTGTCCGAGCTCTTTGGAGAAGCTGGCACTGTTGTGTCTGTTGAGGTTGTGTACGATCGTGTCACGGATAGAAGTAGAGGATTTGCATTTGTTACAATGGGGAGTGTTGGGGATGCTCAAGAAGCAATTCGAATGTTTGATGGCTCGCAAGTTGGCGGTAGGACCGTTAAGGTAAACTTCCCGGAAGTGCCCAAGGGAGGTGAAAGGTTGGTAATGGGGCCGAGAATTCGGAACAACTCCAGAGGCTTTGTAGACAGCCCTCACAAGCTCTATGCTGGAAACCTTGGTTGGAGACTGACTTCAGAGGGTCTTAGAGATGCCTTCGCTGAGAAGCCAGGCTTATTGAGTGCCAAGGTCATCTATGAGAGAGACTCCGGAAGATCTCGAGGTTTTGGATTCGTTACTTTTCAAACTGCGGAGGATGTAGAGGCTGCTTTGAATGCTATGAACGGTGTGGAGATTGAAGGTCGACCTTTAAGGTTGAATTTGGCTGCAGAGAGAGCACCTTCATCTCCTCCAAGAAGTAATGTTGATAGCTCAGAGTTGTATTCTAGGGCCAGTACATGA 912 0.4803 MAAATASVSSSSSICNRIYNPTFTHTSISLTTNFPQRPISYKPLTFNLKPQSFNLFPLPLHPSSAAFDGFEASQEQEQEETSETPQQQEEQRVSDSNDSGRLYVGNLPYSMTSNELSELFGEAGTVVSVEVVYDRVTDRSRGFAFVTMGSVGDAQEAIRMFDGSQVGGRTVKVNFPEVPKGGERLVMGPRIRNNSRGFVDSPHKLYAGNLGWRLTSEGLRDAFAEKPGLLSAKVIYERDSGRSRGFGFVTFQTAEDVEAALNAMNGVEIEGRPLRLNLAAERAPSSPPRSNVDSSELYSRAST 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g03209 303 PANTHER OS02G0815200 PROTEIN 37 284 - -
Arst10g03209 303 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 203 281 IPR000504 GO:0003723
Arst10g03209 303 FunFam 33 kDa ribonucleoprotein, chloroplastic 185 289 - -
Arst10g03209 303 Gene3D - 63 183 IPR012677 -
Arst10g03209 303 SUPERFAMILY RNA-binding domain, RBD 95 178 IPR035979 GO:0003676
Arst10g03209 303 MobiDBLite consensus disorder prediction 70 101 - -
Arst10g03209 303 CDD RRM2_NsCP33_like 204 279 - -
Arst10g03209 303 SMART rrm1_1 101 174 IPR000504 GO:0003723
Arst10g03209 303 SMART rrm1_1 204 277 IPR000504 GO:0003723
Arst10g03209 303 Gene3D - 187 293 IPR012677 -
Arst10g03209 303 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 172 IPR000504 GO:0003723
Arst10g03209 303 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 205 275 IPR000504 GO:0003723
Arst10g03209 303 SUPERFAMILY RNA-binding domain, RBD 200 290 IPR035979 GO:0003676
Arst10g03209 303 MobiDBLite consensus disorder prediction 281 303 - -
Arst10g03209 303 MobiDBLite consensus disorder prediction 87 101 - -
Arst10g03209 303 MobiDBLite consensus disorder prediction 287 303 - -
Arst10g03209 303 CDD RRM1_PSRP2_like 101 180 - -
Arst10g03209 303 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 178 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g03209 Arst-Chr10 100574646 100576545 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g03209 100 300 Eukaryotic Initiation Factors Gene Family AT3G16380 28.856 4.76e-16 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g03209 - - gmx:100814852 429.098