Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g03207 ATGGCGAAGCAAAGTGTTTATCCTAATAAGGAACATGAAGGGATTGCTCACAATTCTTCAGGGCCCTGGTGGAGTCTCTTTGGATCTCAATATGGGGAATCTTGTGGCCAAATGAAACCCTTTTCACTGGAGATTCCTAACTATGTTGATCAAATTGACACCGGCAAGCAATCGGCGAGAGGAGCTGAAAACATATCTGGGAAAGGACATACAACTCAGTTTACCATCTTTCCAGATGATTGTAAAATGCCATGTGGTGCACAAAAGCCTCAAGCAGCCATATCTCTGCAGTCACCACTTGCTGATACTAACACTAGATTCGAGCTAGGATTCAACCAGCCAATGATCTGTGCAAAATATCCATATATGGATCAAATTTATGGGCTCTTCTCACCTTATGGACCTCAAATTTCGGGACGCATAATGCTGCCACTTAGCATGACATCCGATGATGGACCAATTTATGTGAATGCTAAGCAGTACCATGGAATCATCAGACGCCGGCAGTCCCGTGCCAAAGCTGTACTTGATAACAAATTGACAAAACGTCGCAAGCCATATATGCATGAATCACGTCATCTCCATGCAATGCGGCGACCAAGAGGATGTGGCGGTCGCTTCTTGAACACGAAGAATTCCGATGATCAAAATGATAAAAGTGGAAACAAAGTGATCAAAGCTCTTGGCGAACAGTTGCAATCTTGTGGCTCTCAGAGTTCTGAAGTGCTGCAATCTGAGGTTGGAACTCTGAATTCTTCAAAAGAGACTAATGGAAGCAGTCCGAATATTTCCGGGTCAGAGGTGACTAGCATGTATTCACGCGGAGGTCTCGATAGTTTTGCTATCAGTCATCTTGGTTCTGCCGTCACTGTCCACTCTCTAGTGGACATGATAGACGGCGGGAGGGGCATGAATATGATCATGCCCCCCAAATGGGTTGCAGCAGTTGGTGGCAATTGCTGCAACCTTAATGCTTGA 978 0.4519 MAKQSVYPNKEHEGIAHNSSGPWWSLFGSQYGESCGQMKPFSLEIPNYVDQIDTGKQSARGAENISGKGHTTQFTIFPDDCKMPCGAQKPQAAISLQSPLADTNTRFELGFNQPMICAKYPYMDQIYGLFSPYGPQISGRIMLPLSMTSDDGPIYVNAKQYHGIIRRRQSRAKAVLDNKLTKRRKPYMHESRHLHAMRRPRGCGGRFLNTKNSDDQNDKSGNKVIKALGEQLQSCGSQSSEVLQSEVGTLNSSKETNGSSPNISGSEVTSMYSRGGLDSFAISHLGSAVTVHSLVDMIDGGRGMNMIMPPKWVAAVGGNCCNLNA 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g03207 325 SMART cbf3 149 210 IPR001289 GO:0003700|GO:0006355
Arst10g03207 325 Gene3D - 150 212 - -
Arst10g03207 325 PRINTS CCAAT-binding transcription factor subunit B signature 153 175 IPR001289 GO:0003700|GO:0006355
Arst10g03207 325 PRINTS CCAAT-binding transcription factor subunit B signature 184 207 IPR001289 GO:0003700|GO:0006355
Arst10g03207 325 ProSiteProfiles NF-YA/HAP2 family profile. 150 210 IPR001289 GO:0003700|GO:0006355
Arst10g03207 325 Coils Coil 325 325 - -
Arst10g03207 325 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 153 207 IPR001289 GO:0003700|GO:0006355
Arst10g03207 325 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 59 273 IPR001289 GO:0003700|GO:0006355
Arst10g03207 325 MobiDBLite consensus disorder prediction 198 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g03207 Arst-Chr10 100569902 100574012 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g03207 1 323 CCAAT-HAP2 Transcription Factor Family AT3G05690 44.412 3.57e-60 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Arst10g03207 CBFB_NFYA 7.8e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g03207 K08064 - gmx:100527677 483.796