Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g03162 ATGGGAAGGGGAAGAGTGGAACTGAAAAGAATAGAGAACAAGATAAACAGGCAGGTGACGTTTGCAAAGAGGAGGAATGGACTTCTCAAGAAAGCTTATGAGCTTTCTGTTCTGTGTGATGCTGAAGTTGCTCTTATCATCTTCTCTAACCGCGGAAAGCTTTATGAGTTTTGTAGCAGCAATAGCATGCTCAAAACACTTGAAAGGTACCAAAAATGTAGCTATGGTGCGGTGGAAGTCAACAAACCTGCCAAAGAGCTTGAGAACAGTTACCGTGAGTATCTAAAACTGAAAGCAAGATTTGAATCTCTTCAAAGGACTCAGAGGAACCTTCTTGGTGAAGACTTAGGTCCATTAGGCACCAAAGAGCTTGAGCAGCTTGAGCGTCAACTTGATACATCTCTCAGGCAAGTCAGGTCTACTAAGACTCAATTCATGCTGGATCAGTTAGCTGATCTGCAAAACAAGGAACAGATTCTGGTGGAAGCAAACAGATCTTTAACCATGAAGCTGGAGGAAATCAATTCAAGAAACCAGTATCGGCAACCGTGGGAGGCCGGCGAACAAAGCATGCAATATGGTACACAGAATGCTCACTCTCAAGGCTTTTTCCAGCCTCTGGAATGCAATCCCACATTGCAGATAGGTCCTGATTACAGGTACAACCCTGTAGCTTCAGATCAGATAACAGCTACAACTCAGGCTCAACAAGTGAATGGATTTGTTCCTGGATGGATGCTTTGA 744 0.4382 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSNSMLKTLERYQKCSYGAVEVNKPAKELENSYREYLKLKARFESLQRTQRNLLGEDLGPLGTKELEQLERQLDTSLRQVRSTKTQFMLDQLADLQNKEQILVEANRSLTMKLEEINSRNQYRQPWEAGEQSMQYGTQNAHSQGFFQPLECNPTLQIGPDYRYNPVASDQITATTQAQQVNGFVPGWML 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g03162 247 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Arst10g03162 247 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Arst10g03162 247 Coils Coil 124 144 - -
Arst10g03162 247 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Arst10g03162 247 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Arst10g03162 247 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Arst10g03162 247 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Arst10g03162 247 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Arst10g03162 247 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 185 - -
Arst10g03162 247 Coils Coil 84 107 - -
Arst10g03162 247 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Arst10g03162 247 FunFam MADS-box transcription factor 1 13 88 - -
Arst10g03162 247 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Arst10g03162 247 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Arst10g03162 247 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Arst10g03162 247 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g03162 Arst-Chr10 100074369 100081423 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g03162 1 247 MADS-box Gene Family AT5G15800 74.427 2.79e-125 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Arst10g03162 K-box 9.8e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g03162 K09264 - gmx:100785322 455.677