Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g03042 ATGGCAAGGAAGAGAAAGAGCATTGAAGTAGTGGAAGAGGGGAACATAATTGAGGGAAGTTTGGGATGGGAGGAGATGGTGAAGCAAGCTGCAGTGCTTGGTGGAGCGAGGAGGGCAAGGAAGCGCTACGTTGGCGTCCGGCAGAGGCCGTCCGGAAGATGGGTGGCCGAGATTAAGGACACAATTCAGAAGATAAGAGTCTGGCTTGGAACCTTCGACACTGCAGAAGAAGCTGCCAGAGCTTATGACGAGGCGGCGTGCCTTCTTCGCGGCGCCAACACAAGAACAAACTTCTGGCCTTGTTCTCAATCCTCCACAAGCCCTGCCCTGTCTTCAAAGATCACAAATCTGCTCCTTCAGAGGCTTAAGGAAAGGAACAACACTTGTTCTGCTTCGAATTCTGTTCTTATCAATCAAGAAATTCAACAAGTGGAGGCATGTGGAGGGACTAATTCAGCAGAATTCTCAATTGATCAGTTCAATGACCTCCTCAATGAGGAAGATTACGGCGCAAGCAACGTCGAATTCGTCGACAACGCTGCACGGATTGATTACATCACAAGCAGCTTTGAATCTTGCTTGGCCGACCACAACAACAGCACGGATTACAAGCCGGCGAGCGACGACGACAGCGAAGGAGAAAGCTCGGATTTCGGCCTCCAAAGCTATGCAGATTTCGCGTTTCTTGACAACATCTCTGCGCCGCCGAGCGGCTATTACTCGCCGTTCGAGATGGCGGAGGAGATGGATGAAGCTGTGGAAGCAGAGAACTACGGCATACCTGAGTGCTTGAAGAGAATGAAGTATGAGAGAAAGTTCTCAGCTTCACTCTATGCCTTCAATGGAATACCTGAATGCTTGAAGTTGAAACTTGAAAAGGGTAGAACCGGAATTTCCATGGCTGACCAATTGACAAGCCTTCAAATGGCTTGTAACAAAAACAAACAAGAGAAGAAGATTGATGATGACAAAGAAGAAGAAAATATTGATCAACCAATGCCAATTGACATGAATTCCTCTTCTTCTTCGCCTTCGTCGTCGTCGTCATCGTCGTCGTCGTCATCATCAAGTGTTGTTGATGCAGAGCTCTTGTTTTGGAGCTCACTAGATCTTTCACCAATTTACACAAAATCTTTCCCCTATTTGAATTGTTAA 1155 0.4727 MARKRKSIEVVEEGNIIEGSLGWEEMVKQAAVLGGARRARKRYVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRTNFWPCSQSSTSPALSSKITNLLLQRLKERNNTCSASNSVLINQEIQQVEACGGTNSAEFSIDQFNDLLNEEDYGASNVEFVDNAARIDYITSSFESCLADHNNSTDYKPASDDDSEGESSDFGLQSYADFAFLDNISAPPSGYYSPFEMAEEMDEAVEAENYGIPECLKRMKYERKFSASLYAFNGIPECLKLKLEKGRTGISMADQLTSLQMACNKNKQEKKIDDDKEEENIDQPMPIDMNSSSSSPSSSSSSSSSSSSSVVDAELLFWSSLDLSPIYTKSFPYLNC 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g03042 384 FunFam ethylene-responsive transcription factor RAP2-11 41 100 - -
Arst10g03042 384 CDD AP2 41 98 IPR001471 GO:0003700|GO:0006355
Arst10g03042 384 Pfam AP2 domain 42 91 IPR001471 GO:0003700|GO:0006355
Arst10g03042 384 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Arst10g03042 384 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
Arst10g03042 384 SUPERFAMILY DNA-binding domain 42 99 IPR016177 GO:0003677
Arst10g03042 384 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
Arst10g03042 384 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
Arst10g03042 384 MobiDBLite consensus disorder prediction 314 356 - -
Arst10g03042 384 MobiDBLite consensus disorder prediction 333 356 - -
Arst10g03042 384 Gene3D AP2/ERF domain 41 99 IPR036955 GO:0003700|GO:0006355
Arst10g03042 384 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 24 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g03042 Arst-Chr10 98609635 98611005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g03042 40 118 AP2-EREBP Transcription Factor Family AT5G19790 72.152 1.54e-32 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Arst10g03042 AP2 2.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g03042 K09286 - gmx:100786711 405.986