Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Arst10g02985 | ATGGAGATAATCAGCAACAACGCCACCACCACCATAACCAACCCACCAAAATCACCAGAACCCGAATCAGAAATTCCGACCCGGATCCAACCCGCAAACACCAAGCCTGTTTCATTCTCCAACGGAGTACTCAAGCGTCACCACCCTCCACCACACTACCACCACCAACTCGCAAGCCCTACCGCCGTCACCGCCGCCGTGCCGGTTACCTATAAGGAATGCTTGAAGAATCACGCCGCTAGTCTCGGTGGCCACGCGCTCGACGGCTGCGGCGAGTTCATGCCGGCGCCAACTGCTACCGCCGGCGATCCAACATCCATCAAGTGCGCCGCATGCGGCTGCCACCGTAACTTCCACCGCCGCGATCCCGACGAGCCACCACCACCTCTCTCTCCTGTAATCGAGTACCAACCTCACCACCGCCATCACCCTCCACCACCAGCTCCGCCACCTCCTCCGTTCCACCACCACCACCACCGGAGCCCTAACTCCGCCTCACCACCTCCGATCTCCTCTTCCTACTACCCTTCCGCACCGCACATGCTCCTCGCTTTGTCCTCGGGCGGCGGCCTCTCCGTTCCACCGGAAAACACCGCCTTACCAGCCTCCAACCACCACCACCACCACCATCTAAGTTCCCGAAAACGGTTCAGAACGAAGTTCACGCAGGAACAGAAGGAGAAGATGCACGTGTTCGCGGAACGCGTGGGTTGGAAGATTCAGAAGCGAGACGAAGATCTTATCCAGGAATTTTGCCATGAAGTCGGTGTTGATCGTGGCGTTCTCAAAGTTTGGATGCACAATAACAAGAACACGTTTGGGAAAAGAGAGAGAGAACAAGGTAATAATAAGAATGTTCTAGAAGGTCCTGGAATCAACGGTGCTGATGACAACAACAACAACAACAAGAGCAATGGTTTGAACGGTGGGATGATGATGATGATGAACGGTGGTGATGGTAGCGGTCATGATGATGATGGTAGCGCTGATGCAAACGGTGCCGGTACTAATGGCTCTTCCTCTTCTTCTTGA | 1032 | 0.5514 | MEIISNNATTTITNPPKSPEPESEIPTRIQPANTKPVSFSNGVLKRHHPPPHYHHQLASPTAVTAAVPVTYKECLKNHAASLGGHALDGCGEFMPAPTATAGDPTSIKCAACGCHRNFHRRDPDEPPPPLSPVIEYQPHHRHHPPPPAPPPPPFHHHHHRSPNSASPPPISSSYYPSAPHMLLALSSGGGLSVPPENTALPASNHHHHHHLSSRKRFRTKFTQEQKEKMHVFAERVGWKIQKRDEDLIQEFCHEVGVDRGVLKVWMHNNKNTFGKREREQGNNKNVLEGPGINGADDNNNNNKSNGLNGGMMMMMNGGDGSGHDDDGSADANGAGTNGSSSSS | 343 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Arst10g02985 | 343 | NCBIfam | ZF-HD homeobox protein Cys/His-rich dimerization domain | 70 | 122 | IPR006456 | - | |
Arst10g02985 | 343 | Gene3D | - | 201 | 274 | - | - | |
Arst10g02985 | 343 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 2 | 48 | 272 | - | - | |
Arst10g02985 | 343 | Pfam | ZF-HD protein dimerisation region | 69 | 123 | IPR006456 | - | |
Arst10g02985 | 343 | FunFam | Zinc-finger homeodomain protein 2 | 201 | 275 | - | - | |
Arst10g02985 | 343 | MobiDBLite | consensus disorder prediction | 274 | 343 | - | - | |
Arst10g02985 | 343 | MobiDBLite | consensus disorder prediction | 186 | 216 | - | - | |
Arst10g02985 | 343 | MobiDBLite | consensus disorder prediction | 294 | 309 | - | - | |
Arst10g02985 | 343 | SUPERFAMILY | Homeodomain-like | 203 | 275 | IPR009057 | - | |
Arst10g02985 | 343 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 71 | 122 | IPR006456 | - | |
Arst10g02985 | 343 | MobiDBLite | consensus disorder prediction | 120 | 173 | - | - | |
Arst10g02985 | 343 | NCBIfam | homeobox domain, ZF-HD class | 214 | 271 | IPR006455 | - | |
Arst10g02985 | 343 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
Arst10g02985 | 343 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Arst10g02985 | Arst-Chr10 | 97822544 | 97824033 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Arst10g02985 | 16 | 322 | ZF-HD Transcription Factor Family | AT3G28920 | 51.863 | 7.01e-80 | 244 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | zf-HD | Arst10g02985 | ZF-HD_dimer | 1.7e-28 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Arst10g02985 | - | - | egr:104420678 | 309.301 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Arst10g02985 | 10 | 97822544 | 97824033 | Arst4g03713 | 4 | 116091974 | 116093594 | PCT |