Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g02985 ATGGAGATAATCAGCAACAACGCCACCACCACCATAACCAACCCACCAAAATCACCAGAACCCGAATCAGAAATTCCGACCCGGATCCAACCCGCAAACACCAAGCCTGTTTCATTCTCCAACGGAGTACTCAAGCGTCACCACCCTCCACCACACTACCACCACCAACTCGCAAGCCCTACCGCCGTCACCGCCGCCGTGCCGGTTACCTATAAGGAATGCTTGAAGAATCACGCCGCTAGTCTCGGTGGCCACGCGCTCGACGGCTGCGGCGAGTTCATGCCGGCGCCAACTGCTACCGCCGGCGATCCAACATCCATCAAGTGCGCCGCATGCGGCTGCCACCGTAACTTCCACCGCCGCGATCCCGACGAGCCACCACCACCTCTCTCTCCTGTAATCGAGTACCAACCTCACCACCGCCATCACCCTCCACCACCAGCTCCGCCACCTCCTCCGTTCCACCACCACCACCACCGGAGCCCTAACTCCGCCTCACCACCTCCGATCTCCTCTTCCTACTACCCTTCCGCACCGCACATGCTCCTCGCTTTGTCCTCGGGCGGCGGCCTCTCCGTTCCACCGGAAAACACCGCCTTACCAGCCTCCAACCACCACCACCACCACCATCTAAGTTCCCGAAAACGGTTCAGAACGAAGTTCACGCAGGAACAGAAGGAGAAGATGCACGTGTTCGCGGAACGCGTGGGTTGGAAGATTCAGAAGCGAGACGAAGATCTTATCCAGGAATTTTGCCATGAAGTCGGTGTTGATCGTGGCGTTCTCAAAGTTTGGATGCACAATAACAAGAACACGTTTGGGAAAAGAGAGAGAGAACAAGGTAATAATAAGAATGTTCTAGAAGGTCCTGGAATCAACGGTGCTGATGACAACAACAACAACAACAAGAGCAATGGTTTGAACGGTGGGATGATGATGATGATGAACGGTGGTGATGGTAGCGGTCATGATGATGATGGTAGCGCTGATGCAAACGGTGCCGGTACTAATGGCTCTTCCTCTTCTTCTTGA 1032 0.5514 MEIISNNATTTITNPPKSPEPESEIPTRIQPANTKPVSFSNGVLKRHHPPPHYHHQLASPTAVTAAVPVTYKECLKNHAASLGGHALDGCGEFMPAPTATAGDPTSIKCAACGCHRNFHRRDPDEPPPPLSPVIEYQPHHRHHPPPPAPPPPPFHHHHHRSPNSASPPPISSSYYPSAPHMLLALSSGGGLSVPPENTALPASNHHHHHHLSSRKRFRTKFTQEQKEKMHVFAERVGWKIQKRDEDLIQEFCHEVGVDRGVLKVWMHNNKNTFGKREREQGNNKNVLEGPGINGADDNNNNNKSNGLNGGMMMMMNGGDGSGHDDDGSADANGAGTNGSSSSS 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g02985 343 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 70 122 IPR006456 -
Arst10g02985 343 Gene3D - 201 274 - -
Arst10g02985 343 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 48 272 - -
Arst10g02985 343 Pfam ZF-HD protein dimerisation region 69 123 IPR006456 -
Arst10g02985 343 FunFam Zinc-finger homeodomain protein 2 201 275 - -
Arst10g02985 343 MobiDBLite consensus disorder prediction 274 343 - -
Arst10g02985 343 MobiDBLite consensus disorder prediction 186 216 - -
Arst10g02985 343 MobiDBLite consensus disorder prediction 294 309 - -
Arst10g02985 343 SUPERFAMILY Homeodomain-like 203 275 IPR009057 -
Arst10g02985 343 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 71 122 IPR006456 -
Arst10g02985 343 MobiDBLite consensus disorder prediction 120 173 - -
Arst10g02985 343 NCBIfam homeobox domain, ZF-HD class 214 271 IPR006455 -
Arst10g02985 343 MobiDBLite consensus disorder prediction 1 18 - -
Arst10g02985 343 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g02985 Arst-Chr10 97822544 97824033 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g02985 16 322 ZF-HD Transcription Factor Family AT3G28920 51.863 7.01e-80 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Arst10g02985 ZF-HD_dimer 1.7e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g02985 - - egr:104420678 309.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst10g02985 10 97822544 97824033 Arst4g03713 4 116091974 116093594 PCT