Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g02830 ATGGCTTTCCTCAGTAGAGCTGGAAATATACTAAGGCAAGTGACAAGTAGGAAGATCAGTTCGGATTTATGTGAAATCCCGTCTGTTTTCCCGTCTGCACGGTGCATGTCAAATGCTCCAAGTACAAAGCTGTTTATAGGAGGTGTTTCGTATTCCACTGATGAGCAAAGTTTGAGGGAGGTTTTTGGGAAATATGGTGATGTTGTTGATGCAAGGATAATTGTGGACCGTGATTCTGGCAGATCCAGAGGATTTGGGTTTATTACTTACAGTTCCGTTGAGGAGGCGTCAAGTGCCATTCAGGCCTTAGATGGGCAGGATCTACATGGTCGCCGAGTTAAGGTAAATTTTGCAAGCGAAAGACCTCGTGGATTTCAAGGTGGTGGTTTCGGTGGCTCTTTTGACAATGCTCCCTATGGTGCTGGAGCTGGTTCTGGATACCAAGGTGGTTATGGTAACTCTCCATATGGTGCAAGTTCAGGTGGTGGTGGCAGCTATGGCGGTGCACATGGTGCCAATGTTGCTGGAGGTTTTGGTAACGGAAGCAGTGGATATGGCGGAGACAGCTATGGATCAAGTGGAAACACTTACAGCAGTGAGAGTAGCCGAGGTTATGGTGGAGGAAACGATATTGGTACTTATGGTAATGCTGCTGCTAGTGGTGGAGGCTATGGTGGCTATGTCCCGGCTTCTGGATTTGACAGGAGCAATAATTACAACACTTCTGCTGGATTTCCTAACAGTGATAACTATGCCAACGCTACTGGTGGTGGTGGAAACAGTTTCCCCAGTAGTCAATACAATGGAAGTGCCATGGCCGGGTATGGCAGTGGTGGTGTGGGTTCTGGCAGCAGTTTTGCCAGTGGATATGGAGCAACGGGACATGGTAGCACTAATGAATGCAATAACGATCAAGGAACTGCTGTGGATGATTTTGGAGGCTCCATGGACTAA 954 0.4759 MAFLSRAGNILRQVTSRKISSDLCEIPSVFPSARCMSNAPSTKLFIGGVSYSTDEQSLREVFGKYGDVVDARIIVDRDSGRSRGFGFITYSSVEEASSAIQALDGQDLHGRRVKVNFASERPRGFQGGGFGGSFDNAPYGAGAGSGYQGGYGNSPYGASSGGGGSYGGAHGANVAGGFGNGSSGYGGDSYGSSGNTYSSESSRGYGGGNDIGTYGNAAASGGGYGGYVPASGFDRSNNYNTSAGFPNSDNYANATGGGGNSFPSSQYNGSAMAGYGSGGVGSGSSFASGYGATGHGSTNECNNDQGTAVDDFGGSMD 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g02830 317 MobiDBLite consensus disorder prediction 288 309 - -
Arst10g02830 317 Gene3D - 27 135 IPR012677 -
Arst10g02830 317 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 120 IPR000504 GO:0003723
Arst10g02830 317 MobiDBLite consensus disorder prediction 288 317 - -
Arst10g02830 317 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 114 IPR000504 GO:0003723
Arst10g02830 317 PRINTS Eggshell protein signature 38 54 - -
Arst10g02830 317 PRINTS Eggshell protein signature 164 179 - -
Arst10g02830 317 PRINTS Eggshell protein signature 190 200 - -
Arst10g02830 317 PRINTS Eggshell protein signature 221 239 - -
Arst10g02830 317 SUPERFAMILY RNA-binding domain, RBD 36 130 IPR035979 GO:0003676
Arst10g02830 317 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 28 206 - -
Arst10g02830 317 SMART rrm1_1 43 116 IPR000504 GO:0003723
Arst10g02830 317 CDD RRM2_NsCP33_like 43 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g02830 Arst-Chr10 94864274 94866533 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g02830 38 138 Eukaryotic Initiation Factors Gene Family AT3G16380 28.846 8.81e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g02830 K12741 - ccaj:109815980 200.675