Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g02821 ATGTGTGGCCATGTCTTCTGTTATCAATGTGTATCAGATTACTTGAATGGTGATGATAATACATGCCCTGCTCGTGGTTGTAAAGCAGCACTTGCAGAAGATGTTGTTTTCTCCAAAGCTACTTTGAGGAGTTGCTTGTCTGATGAACTTGGTGGTAGTAATTCCATAAAAGCGCATGATTTTGATCATTCACTAGTGCAGCAGAATGAGTACAGTTGGACTAGCATGTTGGACTTAGTTGAGGCATCATTGCAACAATCCTGTATGAAATATAGGAGACTTGATGGGCGGATGTCTCTGATTGCTAGGGACAGATCTGTTAAAGATTTCAATACTGATCCTGAGGTAACTGTTATGCTGATGTCACTAAAAGCAGGAAATCTTGGTTTGAATATGGTTGCTGCATGCCATGTTATTCTTTTGGATCTGTGGTGGAATCCAACGACTGAAGATCAAGCTATTGATCGAGCTCATCGAATTGGATAG 486 0.4074 MCGHVFCYQCVSDYLNGDDNTCPARGCKAALAEDVVFSKATLRSCLSDELGGSNSIKAHDFDHSLVQQNEYSWTSMLDLVEASLQQSCMKYRRLDGRMSLIARDRSVKDFNTDPEVTVMLMSLKAGNLGLNMVAACHVILLDLWWNPTTEDQAIDRAHRIG 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g02821 161 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 38 IPR013083 -
Arst10g02821 161 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 2 161 - -
Arst10g02821 161 SUPERFAMILY RING/U-box 2 37 - -
Arst10g02821 161 Gene3D - 39 161 IPR027417 -
Arst10g02821 161 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 55 161 IPR001650 -
Arst10g02821 161 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 72 161 IPR027417 -
Arst10g02821 161 CDD SF2_C_SNF 73 161 - -
Arst10g02821 161 ProSitePatterns Zinc finger RING-type signature. 2 11 IPR017907 -
Arst10g02821 161 SMART helicmild6 78 161 IPR001650 -
Arst10g02821 161 Pfam Zinc finger, C3HC4 type (RING finger) 2 23 IPR018957 GO:0046872
Arst10g02821 161 Pfam Helicase conserved C-terminal domain 76 161 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g02821 Arst-Chr10 94508530 94512396 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g02821 1 161 RAD5 or RAD16-like Gene Family AT1G61140 46.154 1.38e-52 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g02821 - - adu:110276156 335.495