Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g02793 ATGGGAAGAGGGAAGGTTGTGCTGAAGAGAATAGAGAACAAGGTAAATAGGCAAGTGACATTTTCAAAGAGAAGAAATGGGCTTCTGAAGAAGGCATATGAGCTTTCAGTGCTTTGTGATGCTGAGGTTGCTCTCATCATCTTCTCTAACCGTGGCAAGCTCTATGAGTTCTCTAGTTCCTCCAGCATGATGAAAACCATAGAGAGATATCATATGTACAATTATAGCTTGCCGCAAACCACTCAAGTAAGAAACCATGACACTCAGAACACTTATCAGGACTATGTGACGTTGAAAGCATATGTAGAACTCCTACAAAGTTCACAGAGGAACCTTCTTGGAGAAGATCTAACCAAAATGACTTCAACAGAACTTCAACAGCTTGAAAATCAATTAGAGTCGGCGTTGACGAATATTAGGTCAACTAAGACTCAGTACATGCTTGACCGTCTTACTGATCTTCAGAATCGGGAGAGAGCGCTTGTTGACGTTAATACGGCTTTAAGAACTAAGTTGGAAGAAATTCAGAATTCACAAGTTCCTCTGAGGCTGGCTTGGGATGGGGAAGGGCCTAACAATAACAACCAATGCACTCATCACTTTTCTCCTCGATCAGATTTTACTTTTCAAACTCTTGGGGTTAATCCCAATTTGCACATCGGGTATAATAATTCCATGGGTGATGATGAGGATGGAAATGTTGAAGCATGCGTCTCTGGTTGGATGCTATGA 732 0.4153 MGRGKVVLKRIENKVNRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFSSSSSMMKTIERYHMYNYSLPQTTQVRNHDTQNTYQDYVTLKAYVELLQSSQRNLLGEDLTKMTSTELQQLENQLESALTNIRSTKTQYMLDRLTDLQNRERALVDVNTALRTKLEEIQNSQVPLRLAWDGEGPNNNNQCTHHFSPRSDFTFQTLGVNPNLHIGYNNSMGDDEDGNVEACVSGWML 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g02793 243 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Arst10g02793 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Arst10g02793 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Arst10g02793 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Arst10g02793 243 FunFam MADS-box transcription factor 1 13 86 - -
Arst10g02793 243 Gene3D - 13 88 IPR036879 GO:0003677|GO:0046983
Arst10g02793 243 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Arst10g02793 243 Coils Coil 118 145 - -
Arst10g02793 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Arst10g02793 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Arst10g02793 243 Pfam K-box region 85 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Arst10g02793 243 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Arst10g02793 243 SUPERFAMILY SRF-like 2 82 IPR036879 GO:0003677|GO:0046983
Arst10g02793 243 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Arst10g02793 243 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g02793 Arst-Chr10 94056558 94065944 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g02793 1 221 MADS-box Gene Family AT5G15800 53.846 2.78e-74 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Arst10g02793 K-box 4.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g02793 K09264 - gmx:100804810 286.96