LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst10g02792	ATGGGAAGAGGGAAGGTTGTGCTGAAGAGAATAGAGAACAAGGTAAATAGGCAAGTGACATTTTCAAAGAGAAGAAATGGGCTTCTGAAGAAGGCATATGAGCTTTCAGTGCTTTGTGATGCTGAGGTTGCTCTCATCATCTTCTCTAACCGTGGCAAGCTCTATGAGTTCTCTAGTTCCTCCAGCATGATGAAAACCATAGAGAGATATCATATGTACAATTATAGCTTGCCGCAAACCACTCAAAACACTTATCAGGACTATGTGACGTTGAAAGCATATGTAGAACTCCTACAAAGTTCACAGAGGAACCTTCTTGGAGAAGATCTAACCAAAATGACTTCAACAGAACTTCAACAGCTTGAAAATCAATTAGAGTCGGCGTTGACGAATATTAGGTCAACTAAGACTCAGTACATGCTTGACCGTCTTACTGATCTTCAGAATCGGGAGAGAGCGCTTGTTGACGTTAATACGGCTTTAAGAACTAAGTTGGAAGAAATTCAGAATTCACAAGTTCCTCTGAGGCTGGCTTGGGATGGGGAAGGGCCTAACAATAACAACCAATGCACTCATCACTTTTCTCCTCGATCAGATTTTACTTTTCAAACTCTTGGGGTTAATCCCAATTTGCACATCGGGTATAATAATTCCATGGGTGATGATGAGGATGGAAATGTTGAAGCATGCGTCTCTGGTTGGATGCTATGA	711	0.4149	MGRGKVVLKRIENKVNRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFSSSSSMMKTIERYHMYNYSLPQTTQNTYQDYVTLKAYVELLQSSQRNLLGEDLTKMTSTELQQLENQLESALTNIRSTKTQYMLDRLTDLQNRERALVDVNTALRTKLEEIQNSQVPLRLAWDGEGPNNNNQCTHHFSPRSDFTFQTLGVNPNLHIGYNNSMGDDEDGNVEACVSGWML	236

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst10g02792	236	CDD	MADS_MEF2_like	2	76	IPR033896	GO:0000977\|GO:0045944
	Arst10g02792	236	SUPERFAMILY	SRF-like	2	81	IPR036879	GO:0003677\|GO:0046983
	Arst10g02792	236	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Arst10g02792	236	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Arst10g02792	236	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Arst10g02792	236	Pfam	K-box region	81	165	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Arst10g02792	236	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	57	IPR002100	GO:0003677\|GO:0046983
	Arst10g02792	236	ProSiteProfiles	K-box domain profile.	81	171	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Arst10g02792	236	Coils	Coil	111	138	-	-
	Arst10g02792	236	ProSitePatterns	MADS-box domain signature.	3	57	IPR002100	GO:0003677\|GO:0046983
	Arst10g02792	236	Gene3D	-	13	87	IPR036879	GO:0003677\|GO:0046983
	Arst10g02792	236	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983
	Arst10g02792	236	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
	Arst10g02792	236	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	3	174	-	-
	Arst10g02792	236	FunFam	MADS-box transcription factor 1	13	87	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst10g02792	Arst-Chr10	94056558	94065944	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst10g02792	1	214	MADS-box Gene Family	AT5G15800	53.846	9.74e-73	220

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Arst10g02792		K-box	2.9e-25	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst10g02792	K09264		-	gmx:100804810	282.722

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Arst1g04105	1	103007094	103013970	Arst10g02792	10	94056558	94065944	ECH
	Arst4g03932	4	118006867	118012184	Arst10g02792	10	94056558	94065944	ECH
	Arst10g02792	10	94056558	94065944	Arst10g02792	10	94056558	94065944	ECH
	Arst1g04103	1	102963269	102968887	Arst10g02792	10	94056558	94065944	PCT