Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g02462 ATGGATTCATCAAACCAGAACCAACCTTGTCCCAACCGAACCTTTAATCACTTATACACAAAACCTTGTGCTGAGGAATCAGAATCAGGTTCACTCCCTTTCGAGACACCACAGACCATGGACCCTAGAGGGTATCAATTAGAAGTATTTGAAGTTGCAAAGAAGAGGAATACAATAGCAGTATTGGATACAGGTGCTGGTAAGACCTTAATAGCTGTGTTGCTTATGAAGAACATTGGTCAAGCTATCAGGTCCAGTGGCTCCAAAAAGTTGATTATTTTCTTAGCTCCAACCGTCCATCTTGTCAACCAGCAATATAAGAATATAAGAGATCTTACAGATTTTCAAGTTCAGGAGTATTATGGGGCAAAAGGAGTGGACGCATGGGATTTAAGTATCTGGGAGAAGGAAATTAGTGAAAATGAGGTACTGGTTATGACACCCCAGCTTCTTTTGGATGCTCTAAGAAAGGCTTTCTTGAAGATGGAATCAATATGCTTGATGATTATTGATGAGTGTCATCGAGCAACTGGTAACCATCCCTATGCAAAAGTAATGAAGGAATTCTATCACAAGGCTGATGAAAAGCCTAAAATTTTTGGAATGACAGCATCACCAGTAGGTAAAAAAGGTGTTTCCTCTTCTGTGGATTGTGAGGGTCAGATATCAGAACTGGAAAGTATCTTGGATTCTCGGAGATATACTGTAGAAGATAGGACCGAGATGGAGGTATATATACCTTCTGCAAAAGAAAGTTGTAGATATTATGACCAGGCACAATTCCCTGATTTGAATTTGAAGCCAAAGATTGAAGACTTGTGGTCCAAGTCTGGTGCATTGTTATCGGAATTACAAAGCTCAACTGACGGTACCTCTAAGGATGTGGAGAATAAATTAAATACGCTGCATAAGCGGATGTCCAATGAACTTGCAAGAGTCTTGTATTGCCTTGAAGATCTTGGCCTCCTATGTGCTTATGAGGCTGTTAAAATATGGCATGAAAATTTCTCCAAAGTCGAAGGAGAGTGTGAAGTTTACCAAAAAGGTTTTAGTCAGTGCAAAGCATTCATTGACGTAGTCATGCAAATAGTTGAAGAATCCCTCCATCTTGATGATAACAAGATTCCAGAGCTTGATTTTGATTTTTCAAAGGCAGTAGACCTGGGATACTTATCTCCCAAATTACTTGAACTTATTAAACTCTTCCAGTCATTTGGACATTCATGTGAGGTATTGTGCCTTGTTTTTGTCGAAAGAATCATCACAGCAAAGGTGATTGAAAGATTTATAAAGAAAGTTCCACAGATATCTCATTTTACAGTTTCCTATTTAACCGGAAACAATACGTCAGCTGGTTCACTGACTGCTAAGAAGCAGAAGGAAACATTGGATTCTTTTCGTTCTGGAAAGGTCAATATATTATTTACAACTGAGGTAATTGAGGAAGGAATTCATGTGCCAAAGTGCTCATGTGTGATACGTTTTGACCTACCGAACACATGTCGCAGTTATGTCCAGTCTCGGGGAAGATCTAGGCAGGATGACTCCCAATTTATTGTGATGTTGGAGAGGGGAAACGTGGATCAAAGAAATAAACTGTTTCACATCATCAGGAGTGAGCGATCCGTGACTGAAGCGGCTATATATAAGGAACATCATGCTTCTAATTTAAGGGTGATTACGGAAGTGAAATCAAATATATATTATGTTGAGTCTACTGGAGCATCAGTCAACTTGGACTCAAGTGTTAGTCTTTTAAATCGATATTGTGAAAAGCTCCCATGTGATGAGTACCCCCGTGCAAAGCCCAATTTTGAATTCCTGCCTTTTGAAGGGGCATACAGGTGTAAATTAACATTACCACCTAATGCAGCTTTCCAAACAATAGTCGGTCCCTTGGGTAAAGATGTCCGTTTGGCAAGGAATCTCGTCTGTTTAGAAGCTTGTAAGAAGCTGCATCAGATGCATGCCTTAAATGATCATCTTGTCCCATTCACTGAAAAGCCTCCAAAAGCTGAACATAGCGTGCAAAACAAAGAATCTGGTACAGGATCAGGCGCAGGAACCACAAGAAGAAAAGAATTACATGGCACAGCCAGCATTCGAGCTTTATGTGGTACAATTGAAGACAAACTAGACGGAGCCAAATTTTATGCCTATAGATTTGATTTCAAATGCAGCATTGTCAGTGAAATCTTCTCAGGATTTGTTCTCCTGATTGAGTCAAAGTTTGACGATGATGTTGGAAATATTGAATTAGATCTTTATTTGATCAAAAAAACCGTAAAGGCTTCCTTATCTTTCTGTGGACAAGTTTATTTGAATGCTGAACAGATGATGTATGCAAAATGCTTCCATGAGGTTTTTTTCAATGGTTTGTTTGGGAGATTGGTTCATAAGTCCAAATCAGTAAAAGGAGAGAGGGAATTCTTGCTTCAGAAAGACACAAAATCACTGTGGAGTCCACACTTCTATTTGCTTCTACCACTACAAAAAGGGGATGATGAATCTAAAGGATCTTTGGAAATAAATTGGTCTGGAATAAGTTCTTGTGCTCCTGCAGTTGAATTTTTAAGGAACAAGTTTTCAGTGGTTGCTGGAGATTATGATGGGGGCAGTAAAATTGCGTCACCTTGTGATGCTAATTCATCAAAGGTGGCCTGTGAAGGCACAGATAAAATTCACTTTGCCAATTGTGTAGTTGATGCTAACAGTATAAAGAATCGGGTAGTTTTGGCTATTCACACTGGAAGAATATATTGTATTCTTGAAGCAGATAACAAGCTATGCGCTGAAAGTCCGTTTGATGGAAACGATGAGAAGTCTCCAGAGAACCACATGATTTATTGCGTTGCCATTCATAGATTATTCATCTATGGGATTGCTATGAAACATCCAGGACAACCTTTATTACGTTTGAAGCAAAGTCATAATGCACACAATGTTCTTTTGAATTTCTATGAGGAAGATGAGAAGGATAAGTCATCGCAAATTGGCTCAGCAAACACCAAAATGCCTGCGCATGTTCACATTCCACCTGAGCTTTTATTTATTCTTGATGTTAAAAGACATGTTTTAAAGTCAATGTACTTGCTACCATCATTGATGCATCGTCTTGAATCTCTCACGTTGTCCAGTCAGCTTAGACGAGAGATAGATGGTCAGAGTAGCAATTTCAGCATATCTAGCTCTCTGATTCTAGAAGCACTGACAACCTTAAGATGCTGTGAAAATTTTTCAATGGAACGTCTTGAGTTGCTGGGAGATTCTGTTCTTAAGTTTGTAGTGAGCTGTCATCTCTTTCTTAAATATCCTAAGGAACATGAAGGGAAATTATCTGATAGACGGAAGTGGGCTGTTTGTAATTCAACTCTGCATAAACTGGGAATAAATCGCAAATTACAGGGCTATATCCAAGATTCTGCATTTGAACCACGCCGTTGGGTTGCTCCAGGACAGCGTTCTATACATGTTGTTTCTTGTGAATGTGGGGTGGAAACCCCAGAAGTTCCTGTGGATGGAAAATTCCAGACTGAAGATCCAAAAGTTGTGGTCGGAAAGCTCTGTGACCAGGGTCACCGCTGGATGTGTTCAAAGACAATTTCTGATTGTGTTGAAGCTCTTATAGGAGCATACTATGTAGTTGGCGGATTGATTGCTGCACTACGTGTCATGAAGTGGCTTGGCATTGATTCTGAGCTAGAACTGTCCTTGGTTGAGGAAGCCATTGCTGCTGCATCTCTCCATACATATGCACCAAAACAAGACGAGATTGCAACCCTTGAAATGAAAATTGGGTATAAATTTTCTGTTAAGGGACTCTTACTGGAGGCAATGACACATTTATCTGAGGCTGAACTTGGGATTGGTTGCTGCTATGAGAGGCTTGAATTTCTCGGCGATTCTGTATTGGATCTTCTTATTACATGGCATCTTTATCAGAGCCATAAAGATATTGATCCAGGAGAGCTTACTGACTTGCGTTCTGCTTCTGTCAATAATGACAATTTTGCTCAAGTTGCCGTTAGACGAAACCTTTACCCACACCTTCTGCTCAGCTCTGGAGATTTGGTGAGCCAGATATCAGAATATGTTAAGGTCATTTCTGAATCAGAGAGCAGTACCAGATCACTCCCAGGCGTTAAAGCCCCCAAGGCACTTGGAGATCTAGTGGAAAGTATTGCTGGGGCTATACTAGTTGATACCAAGCTCAATCTTGATGAAGTGTGGAGAATTTTCAATCCTCTGTTGTCTCCCATTGTTACCCCTGATAAACTTGAATTGCCTCCGTTGCGTGAACTAACTGAATTATGTGACTCTCTTGGATATTTTATCAAAGAAAATTGTAAAAGGAAGGGAACTACTGTGCATGCTGAACTTAGTGTACAACTGGAAAACGCACTTTTAGTTCGGAAGGGAAACGGAATGAATAAAAAAATAGCAAAAGGAGAAGCTGCATTTCACTTGTTGAAAGATCTCAAGAAGAAGGGAATTTCTCATGGCAGTAGCATGCCAAAGAGAAAAAGAGAGAATCCTGACTATCTATGCGATTCGTCTAATCCAGAAACCAATATTGGTATTTGCACTGCTCTAACAGATGGACATTCGTCAAAGGCAGTATCGAATAAGAGGGCGAAAGTGGATGAAACTAACACAGCAGAAATTGCATCTGCTGTTTCTTTGCCCCACAAAGACTCATCTCCTGAGGACTCTGATTCCATTCCAGTTATTGCATCTATTAATATGAAGAAAGGAGGACCCCGAACCACACTATATGAACTGTGCAAGAGATTACAGTGGCCATTGCCAGAATTTGATTCAATAGAGTATAAAGATAGATCCCTGTTTGAATCCAGCGAAGGCCTGGAAGGAACAAAGGGATTCAACTGCTTTGTGTCAAAAATAACCTTGTGCATACCGAATGATGGTAATATAGAATGCAAGGGAGAAGCTAGAGCTGATAAGAAGAGTTCATATGACTCTGCTGCAGTTGAAATACTTCATGAGCTACAAAGACTGGGGAAGCTTAAGATTGGTGATGCTTAG 5046 0.4003 MDSSNQNQPCPNRTFNHLYTKPCAEESESGSLPFETPQTMDPRGYQLEVFEVAKKRNTIAVLDTGAGKTLIAVLLMKNIGQAIRSSGSKKLIIFLAPTVHLVNQQYKNIRDLTDFQVQEYYGAKGVDAWDLSIWEKEISENEVLVMTPQLLLDALRKAFLKMESICLMIIDECHRATGNHPYAKVMKEFYHKADEKPKIFGMTASPVGKKGVSSSVDCEGQISELESILDSRRYTVEDRTEMEVYIPSAKESCRYYDQAQFPDLNLKPKIEDLWSKSGALLSELQSSTDGTSKDVENKLNTLHKRMSNELARVLYCLEDLGLLCAYEAVKIWHENFSKVEGECEVYQKGFSQCKAFIDVVMQIVEESLHLDDNKIPELDFDFSKAVDLGYLSPKLLELIKLFQSFGHSCEVLCLVFVERIITAKVIERFIKKVPQISHFTVSYLTGNNTSAGSLTAKKQKETLDSFRSGKVNILFTTEVIEEGIHVPKCSCVIRFDLPNTCRSYVQSRGRSRQDDSQFIVMLERGNVDQRNKLFHIIRSERSVTEAAIYKEHHASNLRVITEVKSNIYYVESTGASVNLDSSVSLLNRYCEKLPCDEYPRAKPNFEFLPFEGAYRCKLTLPPNAAFQTIVGPLGKDVRLARNLVCLEACKKLHQMHALNDHLVPFTEKPPKAEHSVQNKESGTGSGAGTTRRKELHGTASIRALCGTIEDKLDGAKFYAYRFDFKCSIVSEIFSGFVLLIESKFDDDVGNIELDLYLIKKTVKASLSFCGQVYLNAEQMMYAKCFHEVFFNGLFGRLVHKSKSVKGEREFLLQKDTKSLWSPHFYLLLPLQKGDDESKGSLEINWSGISSCAPAVEFLRNKFSVVAGDYDGGSKIASPCDANSSKVACEGTDKIHFANCVVDANSIKNRVVLAIHTGRIYCILEADNKLCAESPFDGNDEKSPENHMIYCVAIHRLFIYGIAMKHPGQPLLRLKQSHNAHNVLLNFYEEDEKDKSSQIGSANTKMPAHVHIPPELLFILDVKRHVLKSMYLLPSLMHRLESLTLSSQLRREIDGQSSNFSISSSLILEALTTLRCCENFSMERLELLGDSVLKFVVSCHLFLKYPKEHEGKLSDRRKWAVCNSTLHKLGINRKLQGYIQDSAFEPRRWVAPGQRSIHVVSCECGVETPEVPVDGKFQTEDPKVVVGKLCDQGHRWMCSKTISDCVEALIGAYYVVGGLIAALRVMKWLGIDSELELSLVEEAIAAASLHTYAPKQDEIATLEMKIGYKFSVKGLLLEAMTHLSEAELGIGCCYERLEFLGDSVLDLLITWHLYQSHKDIDPGELTDLRSASVNNDNFAQVAVRRNLYPHLLLSSGDLVSQISEYVKVISESESSTRSLPGVKAPKALGDLVESIAGAILVDTKLNLDEVWRIFNPLLSPIVTPDKLELPPLRELTELCDSLGYFIKENCKRKGTTVHAELSVQLENALLVRKGNGMNKKIAKGEAAFHLLKDLKKKGISHGSSMPKRKRENPDYLCDSSNPETNIGICTALTDGHSSKAVSNKRAKVDETNTAEIASAVSLPHKDSSPEDSDSIPVIASINMKKGGPRTTLYELCKRLQWPLPEFDSIEYKDRSLFESSEGLEGTKGFNCFVSKITLCIPNDGNIECKGEARADKKSSYDSAAVEILHELQRLGKLKIGDA 1681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g02462 1681 Pfam Type III restriction enzyme, res subunit 53 206 IPR006935 GO:0003677|GO:0005524|GO:0016787
Arst10g02462 1681 Gene3D Dicer dimerisation domain 577 674 IPR038248 -
Arst10g02462 1681 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 394 552 IPR001650 -
Arst10g02462 1681 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 582 672 IPR005034 GO:0016891
Arst10g02462 1681 SMART helicmild6 424 514 IPR001650 -
Arst10g02462 1681 FunFam Endoribonuclease dicer-like 1 385 548 - -
Arst10g02462 1681 Gene3D Ribonuclease III domain 1254 1425 IPR036389 GO:0004525|GO:0006396
Arst10g02462 1681 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1460 1495 IPR014720 -
Arst10g02462 1681 Gene3D paz domain 889 1018 - -
Arst10g02462 1681 PANTHER DICER-RELATED 56 1500 - -
Arst10g02462 1681 MobiDBLite consensus disorder prediction 669 691 - -
Arst10g02462 1681 SUPERFAMILY RNase III domain-like 1059 1234 IPR036389 GO:0004525|GO:0006396
Arst10g02462 1681 PANTHER DICER-RELATED 56 1500 - -
Arst10g02462 1681 Gene3D Ribonuclease III domain 1051 1229 IPR036389 GO:0004525|GO:0006396
Arst10g02462 1681 CDD DEXHc_dicer 42 238 - -
Arst10g02462 1681 Gene3D - 1593 1672 - -
Arst10g02462 1681 SUPERFAMILY RNase III domain-like 1257 1423 IPR036389 GO:0004525|GO:0006396
Arst10g02462 1681 CDD RIBOc 1274 1424 IPR000999 GO:0004525|GO:0006396
Arst10g02462 1681 CDD RIBOc 1065 1228 IPR000999 GO:0004525|GO:0006396
Arst10g02462 1681 FunFam Endoribonuclease dicer-like 1 577 673 - -
Arst10g02462 1681 CDD SF2_C_dicer 390 522 - -
Arst10g02462 1681 ProSiteProfiles Ribonuclease III family domain profile. 1258 1403 IPR000999 GO:0004525|GO:0006396
Arst10g02462 1681 Pfam Dicer dimerisation domain 582 668 - -
Arst10g02462 1681 ProSiteProfiles PAZ domain profile. 906 1020 IPR003100 GO:0005515
Arst10g02462 1681 Gene3D - 36 274 IPR027417 -
Arst10g02462 1681 Pfam Ribonuclease III domain 1082 1216 IPR000999 GO:0004525|GO:0006396
Arst10g02462 1681 Pfam Ribonuclease III domain 1294 1402 IPR000999 GO:0004525|GO:0006396
Arst10g02462 1681 ProSiteProfiles Ribonuclease III family domain profile. 1045 1217 IPR000999 GO:0004525|GO:0006396
Arst10g02462 1681 ProSitePatterns Ribonuclease III family signature. 1294 1302 IPR000999 GO:0004525|GO:0006396
Arst10g02462 1681 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 49 206 IPR014001 -
Arst10g02462 1681 SMART riboneu5 1273 1426 IPR000999 GO:0004525|GO:0006396
Arst10g02462 1681 SMART riboneu5 1064 1237 IPR000999 GO:0004525|GO:0006396
Arst10g02462 1681 FunFam Dicer-like 104 1040 1229 - -
Arst10g02462 1681 FunFam Endoribonuclease dicer-like 1 1252 1424 - -
Arst10g02462 1681 Pfam Helicase conserved C-terminal domain 413 511 IPR001650 -
Arst10g02462 1681 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 89 530 IPR027417 -
Arst10g02462 1681 SMART ultradead3 38 237 IPR014001 -
Arst10g02462 1681 SUPERFAMILY PAZ domain 903 1020 IPR036085 GO:0005515
Arst10g02462 1681 Gene3D - 388 547 IPR027417 -
Arst10g02462 1681 FunFam Endoribonuclease dicer-like protein 37 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g02462 Arst-Chr10 86311714 86322980 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g02462 438 511 Eukaryotic Initiation Factors Gene Family AT3G19760 37.838 4.09e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g02462 K11592 - gmx:100806831 2321.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst10g02462 10 86311714 86322980 Arst10g02462 10 86311714 86322980 ECH
Arst1g02604 1 87813399 87822096 Arst10g02462 10 86311714 86322980 ECH
Arst3g03109 3 54273315 54286267 Arst10g02462 10 86311714 86322980 ECH