Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g02412 ATGGCGCCAATCATGCAATCCTCTCAGCCTTGGGTCGAAAAATACCGACCAAAACAAGTGAAAGACGTAGCTCACCAAGACGAAGTTGTTCGTGTCCTCACCAACACTCTCGAAACTGGAAGCTGCCCCCACATGCTCTTCTATGGACCCCCCGGCACCGGAAAAACAACCACTGCTCTTGCAATAGCTCACCAGCTTTTCGGGCCTGAGCTTTACAAGTCTAGGGTGCTGGAGCTCAATGCAAGTGATGACCGTGGGATTAATGTTGTTCGCACCAAGATAAAGGATTTCGCAGCCGTCGCCGTTGGTACTACTCAGCGCAAGGGTGGTTATCCTTGTCCACCATATAAGATTATTGTCTTGGATGAGGCAGATTCAATGACTGAAGATGCTCAGAATGCCCTAAGGCGAACAATGGAAACTTACTCTAAAGTTACTCGGTTCTTTTTCATATGCAACTACATCAGCAGGATCATAGAACCACTGGCTTCAAGGTGTGCAAAATTCAGGTTCAAGCCATTGTCAGAAGAGATCATGAGCAACCGAATACTGTACATTTGCAATGAAGAAGGACTCAATCTTGATGCTAAGGCTCTTTCAACCCTGAGTTCTATCTCTCAAGGAGATCTTCGTCGGGCTATCACATACTTGCAGTCAGCGGCCCGATTATTTGGATCTTCCATTTCTTCAGAGGACCTGATTTCAGTATCTGGGGTTGTTCCAGCAGAGGTAGTGGAGGCAATTCTGAAAGCATGCAAAAGTGGAAATTTTGATTCAGCCAACAAGGAAGTAAACAATTTCATTGCAGAGGGATATCCAGCCTCTCAGATACTAACTCAGTTATTTGAGGCCATTCTTGAAGATGACATATCAGATGAACAGAAAGCAAGAATTGCCAAGAAGCTGGGAGAAGCAGATAAGTGTCTGGTTGATGGTGCTGATGAATACTTGCAGCTTCTTGACACAGTCAGCACTACAATGCAAGCTTTTTGTAACATGCCGGAAGGATTTGCTTATGGGAGTTAG 1026 0.4532 MAPIMQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTTQRKGGYPCPPYKIIVLDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMSNRILYICNEEGLNLDAKALSTLSSISQGDLRRAITYLQSAARLFGSSISSEDLISVSGVVPAEVVEAILKACKSGNFDSANKEVNNFIAEGYPASQILTQLFEAILEDDISDEQKARIAKKLGEADKCLVDGADEYLQLLDTVSTTMQAFCNMPEGFAYGS 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g02412 341 Pfam ATPase family associated with various cellular activities (AAA) 45 172 IPR003959 GO:0005524|GO:0016887
Arst10g02412 341 Gene3D - 240 328 - -
Arst10g02412 341 CDD HLD_clamp_RFC 174 233 - -
Arst10g02412 341 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 9 320 - -
Arst10g02412 341 FunFam Replication factor C subunit 4 176 239 - -
Arst10g02412 341 SUPERFAMILY post-AAA+ oligomerization domain-like 240 324 IPR008921 GO:0003677|GO:0006260
Arst10g02412 341 CDD AAA 26 166 - -
Arst10g02412 341 SMART AAA_5 41 174 IPR003593 GO:0016887
Arst10g02412 341 Gene3D - 2 173 IPR027417 -
Arst10g02412 341 FunFam Replication factor C subunit 4 240 328 - -
Arst10g02412 341 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 234 IPR027417 -
Arst10g02412 341 Pfam Replication factor C C-terminal domain 241 324 IPR013748 -
Arst10g02412 341 FunFam Replication factor C subunit 5 3 174 - -
Arst10g02412 341 Gene3D - 176 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g02412 Arst-Chr10 85176522 85186948 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g02412 1 337 Core DNA Replication Machinery Family AT1G21690 79.056 0.0 558
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g02412 K10755 - gmx:100798331 612.453