Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g02394 ATGGGTCGTGGAAGAATAGCAATGGAGCTGATTGAGAAGGAAAAAGCTCGGAAGGCAACATTCCTAAAGAGAAAGAATGGATTAATAAAGAAAGTGTACGAATTCTCCACACTTTGTGGTGTTGATGTTTGTGTAATCATCTATGGCCCCAGCTTTGATGGAGGAAAATCCAGCGAACCTGAAACATGGCCCCAAGATCCTAAGGAGGTACAGCGAATCATTCAAAAGTACCATAACACAACGATTGATAGACGTCCTAGGATCTATGATGTTCAAGAGTATTATAGAGATAGGGTTAAGAAGATTGAAGGTGAGATTTCTAAGGTGCACAAGGAGAAGCTTAAGATCATGTATCCTACTTGGGATGACTCTTTCAATGATCTTAGGGAGGACCAATTGAGAATGTTTCTTAGCATTTTGGATTCTAAGATTCTTGCTTGCAATCAAAGAATCAACATGCTAAAGCAAGATCCTAAGGGAAAAACAATGGTACAATCAAAACCCAATTTTGAGGATGTTGTTGCTTCATCAAACCCTTTCATGCCAAACATGCCTCAAGCACAGTTTCTTCCTCATCTTCCCATGACACCCATTATTGATGATACCGCCCAATTACCATTCTACCCTTTGCAAGTAGGGCAAAGTTCATCACAATCTTCCCCTCTTCTTTTTGACCAAAATTGTGGGACTGTGGATTGGGGTGCTTGTAGCACTCATGACAATGGAGATGGAAGCAATCATTACAAAGGGAATATACAATCAATTGAGCCATATAGTTTTGCTCTATCACAATATCAAGATATGCCTCACGAGTTTCAAGCTCTTAATGCACTACATAATGCAAATATGTTTCATCATCAAGTTCAAATGTTCAACTACATGCATGAAAGGAAGTAG 897 0.3935 MGRGRIAMELIEKEKARKATFLKRKNGLIKKVYEFSTLCGVDVCVIIYGPSFDGGKSSEPETWPQDPKEVQRIIQKYHNTTIDRRPRIYDVQEYYRDRVKKIEGEISKVHKEKLKIMYPTWDDSFNDLREDQLRMFLSILDSKILACNQRINMLKQDPKGKTMVQSKPNFEDVVASSNPFMPNMPQAQFLPHLPMTPIIDDTAQLPFYPLQVGQSSSQSSPLLFDQNCGTVDWGACSTHDNGDGSNHYKGNIQSIEPYSFALSQYQDMPHEFQALNALHNANMFHHQVQMFNYMHERK 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g02394 298 CDD MADS_SRF_like 2 78 IPR033897 GO:0000981|GO:0000987|GO:0045944
Arst10g02394 298 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Arst10g02394 298 Gene3D - 13 100 IPR036879 GO:0003677|GO:0046983
Arst10g02394 298 SMART madsneu2 1 63 IPR002100 GO:0003677|GO:0046983
Arst10g02394 298 SUPERFAMILY SRF-like 2 98 IPR036879 GO:0003677|GO:0046983
Arst10g02394 298 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
Arst10g02394 298 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Arst10g02394 298 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Arst10g02394 298 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Arst10g02394 298 PANTHER MADS BOX PROTEIN 3 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g02394 Arst-Chr10 85057527 85058423 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g02394 1 282 Type I MADS-box Gene Family AT5G55690 30.033 1.55e-28 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Arst10g02394 SRF-TF 7e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g02394 - - aip:107620908 541.962