Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g02343 ATGAGTAGCTTGGTTGAGAGGCTTCGTGTAAGATCAGAGCGCAAGCCAATTTATAATTTGGATGATTCTGATGATGATGCTGATTTTTTGCCGAGAAAACCTGGGACTACTCAGGAAACATTTGAGAGGATAGATAGAAGTGATGCAAAAGAAAATTTGTGTCAAGCCTGTGGAGAAAGTGACAATCTTCTGAACTGTGATACATGCACTTATTCTTACCATCCCAAGTGTTTAGTTCCACCAATTAAAGGTCCCATTCCAGACAACTGGAGGTGCCCTGAATGTGTTAGCCCACTCAATGATATTGATAAAATATTAGATTGTGAGATGCGCCCTACTGTAGCTGCTGATGATGATGCCACAAATTTAGGATCAAAGCAAATATTTGTGAAACAATACCTTGTTAAGTGGAAGGGACTCTCGTACTTGCACTGCACATGGGTTCCAGAGAAAGAGTTTGTGAAAGCTTTCAAGGCTTATCCCCGTTTAAGGACCAAAGTGAATAATTTCCATCGTCAAATGGCATCTGTCAATACTTCTGATGAAGACTTTGTTGCCATTCGACCTGAGTGGACTACAGTTGATCGAATACTTGCTTGCAGGGGTGTTGATGATGAGAAGGAATATCTTGTGAAATGGAAAGAGCTTCCATATGATGAATGCTATTGGGAGTTTGAGACAGATATTTCAGCATTTCAACCAGAAATAGAAAGATTCAATAAATTCCGGTCTAGATCCAGCAAACTTGCCTCCATGAAGCAAAGAAGCAGTATTAAGGATGATGTTGAATTGAAGAAACAGCAGAAGGAATTTCAACAGTTTGAACATAGCCCTGAGTTTCTTTCAGGCGGTACGCTACATCCGTATCAGCTAGAAGGCTTGAACTTCTTGCGGTTCTCTTGGTCCAAGCAAACTCATGTTATACTGGCTGATGAAATGGGGCTTGGCAAAACCATACAAAGTATTGCATTCTTAGCATCTCTTTTTGAAGAGGGTGTTTATCCACATTTGGTGGTTGCTCCACTTTCGACATTGCGGAACTGGGAACGTGAATTTGCAACATGGGCACCTCACATGAATGTCGTTATGTATGTTGGATCTGCCCAAGCCCGTTCTATCATAAGAGAGTATGAATTTTACTTCCCAAAGAAACAGAAGATCAAGAAAAAGAAATCTAGTCATATAAGTAGCGAAAGCAAGCAAGATAGGATTAAGTTTGATGTCCTTTTGACTTCATATGAGATGATCAACTATGACACAGTATCACTGAAAGCTATAAAATGGGAGTGCATGATAGTTGATGAAGGACACCGTCTGAAAAATAAGGATTCAAAATTATTTTCTTCATTGAAGCAATATTCTAGCAGACATCGAGTGCTCTTAACTGGGACTCCTCTTCAGAACAACCTTGACGAACTTTTTATGCTTATGCACTTCCTTGATGCTGGGAAGTTTGGAAGTTTAGAGGAGTTCCAGGAAGAGTTTAAGGATATCAATCAAGAGGAACAAATTTCAAGGCTTCATAAAATGTTGGCCCCTCATCTGCTACGAAGAGTAAAGAAAGATGTCATGAAGGAATTACCTCCTAAAAAGGAGCTTATTTTACGTGTGGATTTGAGCAGCAAACAGAAAGAATACTATAAGGCAATTTTAACCCGTAATTATCAGATTTTAACTCGTCGTGGTGGTGCACAAATTTCTCTTATCAATGTTGTTATGGAACTTCGTAAACTCTGTTGTCACCCGTACATGCTAGAGGGAGTTGAACCAGAAATTGACGATCCAAAAGAGGCATTCAGACAACTTCTGGAAACATCGGGGAAGTTGCAATTGGTGGACAAGATGATGGTGAAGCTTAAAGAACAAGGACATAGAGTCCTCATATATTCCCAATTTCAACACATGCTGGACTTGCTTGAAGATTACTGTTCTTACAAGAATTGGCAGTATGAACGGATAGATGGCAAAGTTGGTGGAGCTGAAAGACAAGTAAGGATAGATCGTTTTAATGCGAAAAATTCTTCAAGATTTTGCTTTCTTCTCTCTACTAGAGCTGGTGGATTGGGGATAAACCTTGCAACTGCTGACACGGTTATTATATATGACAGTGATTGGAATCCTCATGCTGACTTACAAGCTATGGCTAGAGCTCATCGTCTTGGACAAACTAACAAGGTGCTGATTTATAGGCTTATAACACGAGGAACCATTGAAGAAAGGATGATGCAGATGACAAAGAAGAAAATGGTGTTGGAGCACCTGGTTGTAGGGAGGTTAAAGGCTCAAAACATCAACCAGGAAGAATTGGATGACATCATAAGGTATGGGTCAAAGGAGTTATTTGCTGATGAAAATGATGAAGCAGGAAAATCTCGCCAGATCCATTATGATGCTGCTGCTATTGATAGATTGCTGAATCGTGATCAAGCTGGAGATGAAGAGGCTACCGTGGATGATGAAGATGATGATGGGTTTTTGAAGAATTTTAAGGTGGCAAATTTTGAGTATATTGATGAAATTGAGGCTGCAGCAGAGGAGGCCGCACAAAAACGTGCAATGGAGACTATGAACAATTCAGAAAGAGCACATTACTGGGAGGAGTTGTTAAAAGATAAATATCAAGAGCATAAAGTTGAGGAGTTTAGTGCATTGGGCAAAGGGAAGCGAAACCGCAAGCTGATGGTATCTGTAGAGGAGGATGACCTTGCCGGCCTGGAAGATGTAAGTTCTGATGGTGAAGATGACAACTATGAAGCAGAGCTTACCGATGGTGAATCAAATTCAGCCGGTGCTACTACTGTTAGAAGGCCTTATAAAAAGAAAATTCGAGCTGATAGCGGTGAGCCACTTCCTCTGATGGAAGGTGAAGGGAAATCGTTCAGAGTACTTGGTTTCAATCAAAATCAGAGGGCTGCATTTGTGCAAATTTTGATGAGGTTTGGGGTTGGTGAATTCGATTGGAAGGAGTTTACTTCCCGCATGAAACAGAAGACTTACCAAGAAATCAAAGATTATGGAACTCTTTTCTTGTCTCATATTGCTGAAGATATTACTGATTCATCTACATTCAGTGATGGTGTTCCCAAAGAGGGACTGCGAATACAAGATGTACTTGTAAGGATTGCACTTTTGCTCCTGATAAGGGACAAAGTAAAGTCTGCATCACGAAACCTTGGAACGCCACTGTTTTCGGATGACATCTTACTACGCTATCCAGGACTGAAGGGTGGAAAGATATGGAAGGAGGAGCATGATTTAGTTTTATTACGAGCTGTATTGAAGCATGGGTACGGGAAATGGCAGTCTATTGTTGACGATAAGGATATCAGAATTCAGGAGCTTATCTGTCAGGAGTTGAATCTTCCTATCATAAATTTACCAGTAGCAGGGCAACTTGGTTCGCAGCTGCAAAATGGCACGAATTTGTTAAATACAGAAGTTCCCAACAACCAATCCAGGGAAAATGGTGGGACGGATGTTACAGCTGATGCTGCACAAGGTTCCGGTGAAGCTAAGAACCAAACACAGTTATATCAAGACTCCAACATATTTTATCATTTTAGAGACATGCAGAGGAGACAGGTTGAGTTCATAAAAAAGAGGGTGCTTCTCTTGGAAAAGGGTCTCAATGCTGAGTACCAGAAAGAATACTTTGGTGATCCAAAAGCAAATGAAGTGGCAACTGAAGAACCTAAAAGTGAACCCAAGGCTACAAACTTTCCAAGCTATAAATTAGGGGACACCGACACCCAGATGACTGATCAACTGCCTCGACTAAAAGCAATAACTGCAGAGGAAACTTCACTTGCTTGTGATAATGATCCAAATCGATCAGAATTGGTTCACCTTTACAATAAGATGTGCAAGGTAGTGGAGGAAAACCCCATTGACAGAGTTAGAGCATCCTTGGCTCGAGAATCAGCTGATGTGAATGTTACGAAGAATTTTCCGCCACTGGAAACCATTTGTGAAGATATGCACAGAATTTTAACACCCACACAACCAGATCAAACCGCCACTGACAAGTCAAAATTGCATTCAGATGACTGCAAAGTGGATAACACTGTTGACAATGAGAGTAGAGATATGGAAATAGAATTAGATTCTGCAAAAGAAGGCCGCACAAACCTGGGAAAGGAGAATGGTCAGTCCCCAATTCTTCCGGGGAAGCAGGATGATATAGAAATGGATGAAAGTAAGATTGACGGGTTGAATGATAACACAGAAAAATCTGATGCTGGGGTCGTTGTATTGGAAGATTAG 4263 0.4077 MSSLVERLRVRSERKPIYNLDDSDDDADFLPRKPGTTQETFERIDRSDAKENLCQACGESDNLLNCDTCTYSYHPKCLVPPIKGPIPDNWRCPECVSPLNDIDKILDCEMRPTVAADDDATNLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFVKAFKAYPRLRTKVNNFHRQMASVNTSDEDFVAIRPEWTTVDRILACRGVDDEKEYLVKWKELPYDECYWEFETDISAFQPEIERFNKFRSRSSKLASMKQRSSIKDDVELKKQQKEFQQFEHSPEFLSGGTLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFEEGVYPHLVVAPLSTLRNWEREFATWAPHMNVVMYVGSAQARSIIREYEFYFPKKQKIKKKKSSHISSESKQDRIKFDVLLTSYEMINYDTVSLKAIKWECMIVDEGHRLKNKDSKLFSSLKQYSSRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHKMLAPHLLRRVKKDVMKELPPKKELILRVDLSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPEIDDPKEAFRQLLETSGKLQLVDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYCSYKNWQYERIDGKVGGAERQVRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVLIYRLITRGTIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKELFADENDEAGKSRQIHYDAAAIDRLLNRDQAGDEEATVDDEDDDGFLKNFKVANFEYIDEIEAAAEEAAQKRAMETMNNSERAHYWEELLKDKYQEHKVEEFSALGKGKRNRKLMVSVEEDDLAGLEDVSSDGEDDNYEAELTDGESNSAGATTVRRPYKKKIRADSGEPLPLMEGEGKSFRVLGFNQNQRAAFVQILMRFGVGEFDWKEFTSRMKQKTYQEIKDYGTLFLSHIAEDITDSSTFSDGVPKEGLRIQDVLVRIALLLLIRDKVKSASRNLGTPLFSDDILLRYPGLKGGKIWKEEHDLVLLRAVLKHGYGKWQSIVDDKDIRIQELICQELNLPIINLPVAGQLGSQLQNGTNLLNTEVPNNQSRENGGTDVTADAAQGSGEAKNQTQLYQDSNIFYHFRDMQRRQVEFIKKRVLLLEKGLNAEYQKEYFGDPKANEVATEEPKSEPKATNFPSYKLGDTDTQMTDQLPRLKAITAEETSLACDNDPNRSELVHLYNKMCKVVEENPIDRVRASLARESADVNVTKNFPPLETICEDMHRILTPTQPDQTATDKSKLHSDDCKVDNTVDNESRDMEIELDSAKEGRTNLGKENGQSPILPGKQDDIEMDESKIDGLNDNTEKSDAGVVVLED 1420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g02343 1420 SMART ultradead3 282 494 IPR014001 -
Arst10g02343 1420 CDD CD1_tandem 98 172 - -
Arst10g02343 1420 ProSiteProfiles Chromo and chromo shadow domain profile. 192 241 IPR000953 -
Arst10g02343 1420 Gene3D - 278 527 IPR038718 -
Arst10g02343 1420 Pfam PHD-finger 54 96 IPR019787 -
Arst10g02343 1420 SMART DUF1086_2 909 1068 IPR009462 GO:0003677|GO:0006338
Arst10g02343 1420 MobiDBLite consensus disorder prediction 1333 1420 - -
Arst10g02343 1420 MobiDBLite consensus disorder prediction 1391 1420 - -
Arst10g02343 1420 MobiDBLite consensus disorder prediction 904 935 - -
Arst10g02343 1420 MobiDBLite consensus disorder prediction 904 921 - -
Arst10g02343 1420 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 298 483 IPR014001 -
Arst10g02343 1420 ProSitePatterns Zinc finger PHD-type signature. 54 95 IPR019786 -
Arst10g02343 1420 CDD CD2_tandem 190 241 - -
Arst10g02343 1420 MobiDBLite consensus disorder prediction 1341 1375 - -
Arst10g02343 1420 MobiDBLite consensus disorder prediction 1144 1173 - -
Arst10g02343 1420 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 266 518 IPR027417 -
Arst10g02343 1420 Pfam CHD subfamily II, SANT-like domain 932 1065 IPR009462 GO:0003677|GO:0006338
Arst10g02343 1420 Gene3D - 103 175 - -
Arst10g02343 1420 SMART DUF1087_2 838 904 IPR009463 -
Arst10g02343 1420 SMART chromo_7 99 165 IPR000953 -
Arst10g02343 1420 SMART chromo_7 190 244 IPR000953 -
Arst10g02343 1420 MobiDBLite consensus disorder prediction 1223 1250 - -
Arst10g02343 1420 Gene3D - 180 241 - -
Arst10g02343 1420 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 611 772 IPR001650 -
Arst10g02343 1420 ProSiteProfiles Chromo and chromo shadow domain profile. 100 182 IPR000953 -
Arst10g02343 1420 Gene3D - 528 752 IPR027417 -
Arst10g02343 1420 Gene3D - 1035 1212 - -
Arst10g02343 1420 Pfam SNF2-related domain 306 585 IPR000330 GO:0005524|GO:0140658
Arst10g02343 1420 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 32 102 IPR013083 -
Arst10g02343 1420 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 45 1337 - -
Arst10g02343 1420 Pfam CHD subfamily II, DUF1087 843 901 IPR009463 -
Arst10g02343 1420 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 45 1337 - -
Arst10g02343 1420 ProSiteProfiles Zinc finger PHD-type profile. 51 98 IPR019787 -
Arst10g02343 1420 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 520 776 IPR027417 -
Arst10g02343 1420 CDD SF2_C_SNF 606 732 - -
Arst10g02343 1420 Pfam Chromo (CHRromatin Organisation MOdifier) domain 193 241 IPR023780 -
Arst10g02343 1420 Pfam Chromo (CHRromatin Organisation MOdifier) domain 103 157 IPR023780 -
Arst10g02343 1420 SMART PHD_3 53 96 IPR001965 -
Arst10g02343 1420 Pfam Helicase conserved C-terminal domain 609 721 IPR001650 -
Arst10g02343 1420 ProSiteProfiles Rubredoxin-like domain profile. 61 105 IPR024934 GO:0005506
Arst10g02343 1420 SUPERFAMILY Chromo domain-like 66 176 IPR016197 -
Arst10g02343 1420 SMART helicmild6 637 721 IPR001650 -
Arst10g02343 1420 SUPERFAMILY Chromo domain-like 177 242 IPR016197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g02343 Arst-Chr10 83272584 83285800 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g02343 308 782 RAD5 or RAD16-like Gene Family AT1G02670 23.679 5.38e-30 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Arst10g02343 SNF2_N 4.4e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g02343 K11643 - gmx:100804203 2393.23