Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g02342 ATGACCATGGAGAATGGTGTTGATGATAGCAGTGATCAGTTCCCCAAAGGAATGCGTGTTCTTGCAGTTGATGATGACCCCACTTGCCTAATGGTTCTAGAAACTCTTCTCAGAAGATGTCAATATCATGTTACCACAACTAGCCAAGCAATAAAGGCATTGAAGCTGTTGAGAGAGAACAAGTTTGACCTTGTAATAAGTGATGTGCACATGCCAGACATGGATGGATTTAAGCTTCTTGAGCTTGTGGGACTGGAAATGGACCTACCTGTCATAATGTTGTCCGCAAATGGTGATACAAAGCTTGTGATGAAGGGGATTTCTCATGGAGCTTGTGATTATCTACTAAAGCCTGTGAGAATTGAAGAGCTCAAGAACATTTGGCAGCCAGGAAATTCAGAACAAAATGGGAAGCTGAATAAGAAAAGGAAGGATCAGGATGATGAAGAAGATGAGGAGCAAGATAATGGCCATGACAATGAGGATCCTTCGGCCCAGAAGAAGCCTCGTGTTGTTTGGTCTGTGGAGCTTCACCGCAAGTTTGTTGCTGCTGTTAATCAGTTAGGCATTGACAAGGCTGTACCTAAGAAGATTCTTGATTTGATGAATGTTGACAAACTGACGAGGGAAAATGTGGCGAGCCATCTCCAGAAATATAGGCTTTATCTGAAACGAATCAGCTGTGTAGCGAACCAACAGGCGAATATGGTGGCGGCCCTAGGGAGTGCAGATCCATCCTACTTGAGAATGGGTTCTCTGAGTGGCGTTGGACATTTGCAAGCATTGAGTGGCTCGGGACAGTTTCCTAACAATGCTTTCAGGTCCTTTCCGCCGAATGGGATGGTTAGCAGACTGAACACTCCTGCTGGATTGAATGTGCATGGATTCCCTTCTTCAGGAGCATTTCACTTGGGTCAATCACAGAATCTAAACAGCTCAACTGTTGAGCAGCTGAAGTATCGGTCGTCCATTGTTCCTGTTAATCAGAATGGTGTTCATGGAATGCAGGTGCCTATGGGGCTTGATCCATTGCAACACAATAAGGGTGTTATTCCTGTTCAGAACTTGACCACTGGTATTGATGCTAAAACAAATTTTCCTGTCTCAAATAAACTCCCGGATCCACAATCAAGAGTAGCATCCGGCGCGCATCCCCCGCTTCTTGGTAGCTCAAACAATGCCTTGATGTTGGAAGCACGGCCACAAGACACACAAGGGGTTTTAGAATACGAAAACTTATCTTCTTCGGTACCTTCCCAACATTCAGAACTCCCATTCTCTTTGCTGGATCAAGGTAGATACAGTGATAATTGGTCTAGTGCTGTGCAATCATCTGGGATCCAGACCGGTTCTTACCCTTCAAGCGGAAGTTTTAGACAGACGGCAATACCTGCTACAGATAACATGGCTTCTTTACCCTTGCAAGAAGGGAATCTGAGTGTTTCTTCATCCATCTCTTTGCTGCCTAACCAGTCCTACAATTCGTTGATAGATACACACTCCCAAGCTGTGATTTTAGCTAATAGAACTGGTCATGTAAGCAATAGTGATGTGCCATTTCAAGGTTGGGATGATCGCAATGAAGATGCTAGCTACCATTCAAATGCTGTTTGTAACACAATAAACACTGTGGCCCCAGGTTCGAGTTCTGTTGGTCACACAACAATAAACTCAACCTTACACAGAAACTTGGAGTTTAATTATGGTGATAGCTTGCAAATGAAGCGCGATGCGATGACAAAGTTAGCGAAAGGGACCTCATTGAAACCGCATCAGGTGAATATCATGAACCAGCAGAAGTCTCAGCAGGGTAACTTCTCTAATAATGTTGGTTCCCTGGAAGACTTGGTCAGTTCAATGATGAAACAGGAGCAAGATGAGATGAAAATATTGGATGGAGGCTTCATTTGTGATAATTATTCTGGTGGCATATCAATGTGA 1941 0.4395 MTMENGVDDSSDQFPKGMRVLAVDDDPTCLMVLETLLRRCQYHVTTTSQAIKALKLLRENKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDTKLVMKGISHGACDYLLKPVRIEELKNIWQHXGNSEQNGKLNKKRKDQDDEEDEEQDNGHDNEDPSAQKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVDKLTRENVASHLQKYRLYLKRISCVANQQANMVAALGSADPSYLRMGSLSGVGHLQALSGSGQFPNNAFRSFPPNGMVSRLNTPAGLNVHGFPSSGAFHLGQSQNLNSSTVEQLKYRSSIVPVNQNGVHGMQVPMGLDPLQHNKGVIPVQNLTTGIDAKTNFPVSNKLPDPQSRVASGAHPPLLGSSNNALMLEARPQDTQGVLEYENLSSSVPSQHSELPFSLLDQGRYSDNWSSAVQSSGIQTGSYPSSGSFRQTAIPATDNMASLPLQEGNLSVSSSISLLPNQSYNSLIDTHSQAVILANRTGHVSNSDVPFQGWDDRNEDASYHSNAVCNTINTVAPGSSSVGHTTINSTLHRNLEFNYGDSLQMKRDAMTKLAKGTSLKPHQVNIMNQQKSQQGNFSNNVGSLEDLVSSMMKQEQDEMKILDGGFICDNYSGGISM 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g02342 647 ProSiteProfiles Response regulatory domain profile. 19 132 IPR001789 GO:0000160
Arst10g02342 647 SUPERFAMILY Homeodomain-like 167 226 IPR009057 -
Arst10g02342 647 FunFam Two-component response regulator 165 228 - -
Arst10g02342 647 Pfam Response regulator receiver domain 20 126 IPR001789 GO:0000160
Arst10g02342 647 MobiDBLite consensus disorder prediction 368 392 - -
Arst10g02342 647 PIRSF RR_ARR_type-B 1 132 IPR017053 GO:0003677|GO:0003700|GO:0009736
Arst10g02342 647 PIRSF RR_ARR_type-B 131 645 IPR017053 GO:0003677|GO:0003700|GO:0009736
Arst10g02342 647 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 166 225 IPR017930 -
Arst10g02342 647 CDD REC_typeB_ARR-like 20 130 - -
Arst10g02342 647 PANTHER TWO-COMPONENT RESPONSE REGULATOR 18 357 IPR045279 GO:0009736
Arst10g02342 647 MobiDBLite consensus disorder prediction 132 170 - -
Arst10g02342 647 SUPERFAMILY CheY-like 16 131 IPR011006 -
Arst10g02342 647 Pfam Myb-like DNA-binding domain 171 221 IPR001005 -
Arst10g02342 647 NCBIfam myb-like DNA-binding domain, SHAQKYF class 169 222 IPR006447 GO:0003677
Arst10g02342 647 Gene3D - 18 163 - -
Arst10g02342 647 Gene3D - 165 228 - -
Arst10g02342 647 SMART REC_2 18 128 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g02342 Arst-Chr10 83224430 83227836 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g02342 1 634 Response Regulator Gene Family AT2G25180 42.456 1.29e-131 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Arst10g02342 Response_reg 4e-25 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst10g02342 10 83224430 83227836 Arst10g02342 10 83224430 83227836 ECH
Arst6g03745 6 105613135 105616761 Arst10g02342 10 83224430 83227836 PCT