Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g02319 ATGGCATACCATAACCACCACCTGTCTCAAGACCTTTCACCACTTCACCACCAACATTTCAGTGACCAACAGCAACCTCAACCGCTCTCAGATAACACTGCTATACTTTCCGAGCACCTCTCCCCCACTGACCCCACCGCCAAATCCCCCTCCGATCCTCACCCCAACTGGCTCAACAACGCCCTTCTCCGCACCCACTACACCAACAACGACACCAACGCCACCAATTTTCTCAACCTCCACACCGCCGCCTCTGCTGAGGGCGGAGGTGGGTTGGTGAACTGGCAGAATGCTCGGTACAAGGCGGAGATTCTGTCACACCCGCTTTACGAGCAGCTTCTGTCGGCACACGTGGCGTGCCTGCGGATCGCCACGCCGGTGGACCAGTTACCAAGGATCGACGCTCAGTTGGCTCAGTCCCAGAATGTGGTGGCCAAGTACTCTTCCTTCGCTCACGCTCCTCTCGGCGATGACAAAGAGCTCGACCAGTTCTTGTCACACTATGTTTTGTTGCTCTGTTCCTTCAAAGAACAACTCCAACAACATGTTCGTGTCCATGCAATGGAAGCAGTAATGGCTTGCTGGGAGATTGAGCAATCCTTACAAAGTCTAACAGGAGTTTCGCCAGGGGAAGGTACCGGAGCAACAATGTCCGATGATGAAGATGACCAAGTAGACAGTGATGCCAATCTGTTTGATGGTGGTTTGGATGGTTCCGATAGCATGGGATTTGGCCCTCTTGTTCCAACAGAGAATGAGAGATCCCTTATGGAACGTGTAAGACATGAATTGAAGCATGAACTGAAACAGGGTTATAAGGATAAAATTGTGGACATAAGAGAGGAAATTTTGCGCAAAAGACGAGCCGGGAAACTTCCCGGGGACACCACCTCTGTTCTTAAAGCATGGTGGCAATCACATTCCAAGTGGCCTTACCCTACAGAGGAAGATAAGGCAAGGTTGGTGCAGGAAACAGGATTGCAATTGAAGCAGATCAATAATTGGTTCATCAACCAAAGGAAGAGGAACTGGCACAGTAATCCTTCAACTTCTACTTCCTTGAAGAGCAAGCGCAAAAGGTGA 1083 0.5042 MAYHNHHLSQDLSPLHHQHFSDQQQPQPLSDNTAILSEHLSPTDPTAKSPSDPHPNWLNNALLRTHYTNNDTNATNFLNLHTAASASDSSAAAAAAASQSSAQWLARPVLHRNHSEVIDDVAPLSNNESPDMKVAGDGKGEVATVESGGEGGGGLVNWQNARYKAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSSFAHAPLGDDKELDQFLSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDDQVDSDANLFDGGLDGSDSMGFGPLVPTENERSLMERVRHELKHELKQGYKDKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSTSLKSKRKR 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g02319 423 Pfam ELK domain 326 347 IPR005539 GO:0003677
Arst10g02319 423 SMART KNOX2_2 214 269 IPR005541 GO:0003677|GO:0005634
Arst10g02319 423 ProSiteProfiles 'Homeobox' domain profile. 346 409 IPR001356 GO:0003677
Arst10g02319 423 SMART ELK_2 326 347 IPR005539 GO:0003677
Arst10g02319 423 Pfam KNOX2 domain 218 268 IPR005541 GO:0003677|GO:0005634
Arst10g02319 423 Pfam Homeobox KN domain 366 405 IPR008422 GO:0003677|GO:0006355
Arst10g02319 423 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 93 410 - -
Arst10g02319 423 SUPERFAMILY Homeodomain-like 348 412 IPR009057 -
Arst10g02319 423 Gene3D - 347 408 - -
Arst10g02319 423 MobiDBLite consensus disorder prediction 403 423 - -
Arst10g02319 423 SMART KNOX1_2 161 205 IPR005540 GO:0003677|GO:0005634
Arst10g02319 423 FunFam homeobox protein knotted-1-like 3 isoform X1 347 408 - -
Arst10g02319 423 Pfam KNOX1 domain 163 204 IPR005540 GO:0003677|GO:0005634
Arst10g02319 423 CDD homeodomain 349 410 IPR001356 GO:0003677
Arst10g02319 423 ProSiteProfiles ELK domain profile. 326 346 IPR005539 GO:0003677
Arst10g02319 423 SMART HOX_1 348 413 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g02319 Arst-Chr10 82257625 82261529 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g02319 1 423 Homeobox Transcription Factor Family AT5G25220 67.421 0.0 545
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Arst10g02319 KNOX2 2e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g02319 - - qsa:O6P43_015734 615.535