Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g02302 ATGAACGAGGCCCGAATTGAAATCACGATTCCACACTTGTTCAGATGCCCAATAAGCTTAGACTTGTTGGAAGATCCAGTGACACTATGCACAGGCCAAACCTATGACAGATCAAGCATTGAAAAATGGCTTTCTGCTGGTAACCTCACTTGCCCAGTCACAATGCAGAAGCTTCACGATCCTTCCATTGTTCCCAACCACACTCTCCGCCACTTGATCGACCAGTGGCTCCAACTTGGCCACCAATTCCACCCTGGAAACTCCGCAACAATCGATTACTTGACCAGCCTCAAACACGCTCTCCAGTCTCCTGACTCCTCCTTGGACCACAAGTTACAAGCACTCCACAAGATTCAACTACTCTCCGACGAGTACTGCTCCTTTAAGCGCTCATGCTTTAACCAACTGAGCTATTTGACGCTTCTATTACAACTTGTTTTTGAAACAAGATCCATGGAATTCACAGAGCTGGCGCTTTCTTGCATCGTAAAGTTGCTTCCTCTCGTGAATTTGGATCCGCTGAACATGATCAAAGACGAGTCGAAGCTATCAACGTTTGTTTCGTTATTGGAAAAGGGAACAACCAAAACCAAAACTAGCTTGTGCCATCTCATAGATTCAACCGCAACATCAACACAAACGCAAGAGTTATGTCACGTGCTTGGAAATTCACGGAAGGTGATAGAAGAGATTGTGAGACTAGCTCGCGAAATCCAGGAGGAAGAGTCATCTAAAGCAGGAATCAAAGCCATGTCAGCATTATGCAGCTTGCAATCGAACAGAGAGAGTTTGGTGAGAGGAGGAGCAATTGATGGAGTGATAGCATACATGTCGGGATCTGACAAGTTGCAGAAGAATTTGGCTCCAATGGCAATGGGGATAATAGAGAAGCTTGTGGTGTTAGAGAGTGGGAAAGTGGGAGTGGTGAACCACCCGAGTGGTATTCAAACGGTGGTGAAGATGGTGTTCAGGGTTTGCAACAACCAAGAGTATTGCTGTAGTGAGGTTGCTGTTGGGGTGCTTTTGGTAATTTGTCGTGATTATGGGGTTGCAAGAGAGGAAGCCATTGGAGCTGGGATCTTGACTCAGTTGCTTTTCCTTCTTCAGAGTCAGTGTGGTAACAAAACCAAGACCAAGGCCAGGATGCTTCTCAAGTTGTTGAGATCCAAGTGGAATCAGGAATCAAACAACAAACTATGA 1200 0.4575 MNEARIEITIPHLFRCPISLDLLEDPVTLCTGQTYDRSSIEKWLSAGNLTCPVTMQKLHDPSIVPNHTLRHLIDQWLQLGHQFHPGNSATIDYLTSLKHALQSPDSSLDHKLQALHKIQLLSDEYCSFKRSCFNQLSYLTLLLQLVFETRSMEFTELALSCIVKLLPLVNLDPLNMIKDESKLSTFVSLLEKGTTKTKTSLCHLIDSTATSTQTQELCHVLGNSRKVIEEIVRLAREIQEEESSKAGIKAMSALCSLQSNRESLVRGGAIDGVIAYMSGSDKLQKNLAPMAMGIIEKLVVLESGKVGVVNHPSGIQTVVKMVFRVCNNQEYCCSEVAVGVLLVICRDYGVAREEAIGAGILTQLLFLLQSQCGNKTKTKARMLLKLLRSKWNQESNNKL 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g02302 399 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Arst10g02302 399 FunFam RING-type E3 ubiquitin transferase 10 81 - -
Arst10g02302 399 SUPERFAMILY ARM repeat 93 379 IPR016024 -
Arst10g02302 399 Gene3D - 183 399 IPR011989 -
Arst10g02302 399 SUPERFAMILY RING/U-box 5 78 - -
Arst10g02302 399 PANTHER WDSAM1 PROTEIN 7 394 IPR045185 GO:0061630
Arst10g02302 399 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 85 IPR013083 -
Arst10g02302 399 CDD RING-Ubox_PUB 11 58 IPR045210 -
Arst10g02302 399 Pfam U-box domain 10 78 IPR003613 GO:0004842|GO:0016567
Arst10g02302 399 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g02302 Arst-Chr10 81896052 81898022 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g02302 8 391 U-box Gene Family AT3G19380 33.249 3.09e-55 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g02302 - - gmx:100815247 559.681