Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g02249 ATGGCTCCTGCCACCTCACCGGCGCGGTCGGCCAAGAGGCTCATCGGCTTTAGCCGCCGGACGCAGGCAATTCACCCGCACGGTCAGCAGTCGCCGTGCGGGCCGCCGGCGAAGAAGTACAAGTCGATGACGGACATAATGGCGAGGGCGCCGTACGCCGTCGTGGAGCGCGAAGATTACGGCGACCTCAGCTGCGAGCAATGCGGCTCCGGCGAGCGGCCGGAGGAGCTGCTTCTCTGCGACAAATGCGACAGAGGGTTCCACATGAAATGCGCGAGGCCTATCGTCGTTAGGGTTCCTATTGGATCCTGGCTTTGCCCTGAATGCGTTGGAAGCAACAACAGACAGAGAAGAATAAAAAGCTTCTCGCAGCGTAAGTTAATTGATTTCTTCGGGATTCAGAGGAGCGACAATGATCACGTTAGAGCTGCTTCTTCTCAAGATGCTAAGAAGCGTCGAAGACGATCACGCCCTCTGGTTATGCACAAGAGAAGGAGGAGATTATTACCATTTATTCCTTCAGAAGATTCGAACCAAAGAAATAAACAGATGAATTCACTTGCTACTGCTTTATCAGCATTGCATATGGATTTTAGCGATGACCTCAGATACTTGCCTGGAATGGCTCCTAGATCTGCTAATCAAGCCATATTAGAAGATGGTGGCATGCAGATTCTTTCAAAGGAAGATATGGAGACCTTGGAACACTGCAGAGCTATGTCTAGAAGAGGCGAATGTGCCCCCTTTCTAATTGTTTATGATGCACGCGAAGGCTATACTGTGGTGGCTGATGCTCCAATCAAGGATTTGACATTTATTGCGGAATACACGGGCGATGTGGATTACCTTAAGAATCGAGAAAGTGATGATTGTGACAGTATGATGACCCTTCTTTTATCAAGTGATCATTCTCAAAGTCTTGTCATCTGTGCTGATAAACGCGGAAACATTGCTAGGTTTATTAATGGCATCAACAATCATACTCCGGAAGGTAGGAAGAAGCAGAACTGTAAATGTGTGAGATACAATGTTAACGGTGAATGCAGGGTCCTTTTGGTTGCTACTCGTGATATTTCTAAGGGCGAGAGGCTTTATTATGATTATAATGGTTATGAGCATGAATACCCCACACATCATTTTGTCTAA 1146 0.4764 MAPATSPARSAKRLIGFSRRTQAIHPHGQQSPCGPPAKKYKSMTDIMARAPYAVVEREDYGDLSCEQCGSGERPEELLLCDKCDRGFHMKCARPIVVRVPIGSWLCPECVGSNNRQRRIKSFSQRKLIDFFGIQRSDNDHVRAASSQDAKKRRRRSRPLVMHKRRRRLLPFIPSEDSNQRNKQMNSLATALSALHMDFSDDLRYLPGMAPRSANQAILEDGGMQILSKEDMETLEHCRAMSRRGECAPFLIVYDAREGYTVVADAPIKDLTFIAEYTGDVDYLKNRESDDCDSMMTLLLSSDHSQSLVICADKRGNIARFINGINNHTPEGRKKQNCKCVRYNVNGECRVLLVATRDISKGERLYYDYNGYEHEYPTHHFV 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g02249 381 ProSitePatterns Zinc finger PHD-type signature. 65 109 IPR019786 -
Arst10g02249 381 SMART set_7 247 375 IPR001214 GO:0005515
Arst10g02249 381 ProSiteProfiles SET domain profile. 247 369 IPR001214 GO:0005515
Arst10g02249 381 MobiDBLite consensus disorder prediction 139 159 - -
Arst10g02249 381 Pfam SET domain 292 369 IPR001214 GO:0005515
Arst10g02249 381 CDD SET_ATXR5_6-like 244 381 - -
Arst10g02249 381 Pfam PHD-finger 65 110 IPR019787 -
Arst10g02249 381 PANTHER N-LYSINE METHYLTRANSFERASE KMT5A 143 379 - -
Arst10g02249 381 SUPERFAMILY SET domain 241 369 IPR046341 -
Arst10g02249 381 FunFam Histone-lysine N-methyltransferase ATXR5 153 381 - -
Arst10g02249 381 SMART PHD_3 64 110 IPR001965 -
Arst10g02249 381 SUPERFAMILY FYVE/PHD zinc finger 53 116 IPR011011 -
Arst10g02249 381 Gene3D SET domain 152 381 IPR046341 -
Arst10g02249 381 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 125 IPR013083 -
Arst10g02249 381 ProSiteProfiles Zinc finger PHD-type profile. 62 112 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g02249 Arst-Chr10 80065924 80069871 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g02249 36 151 C2H2 Transcription Factor Family AT3G01460 33.051 1.31e-09 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Arst10g02249 SET 1.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g02249 K24406 - qsa:O6P43_023354 575.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst10g02249 10 80065924 80069871 Arst10g02249 10 80065924 80069871 ECH