LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst10g02245	ATGGCAAAACCTATACCCAAAATTGGTTCGCGTAAAAATGGACGTATTGGTTCACGTAAACATGCTCGTAAAATACCAAAGGGCGTTATTCATGTTCAAGCTAGTTTCAACAATACCATTGTCACTGTTACCGATGTACGGGGTCGGGTAATTTCGTGGTCCTCCGCAGGTACTTGTGGATTCAAAGGTACGCGAAGGGGAACACCATTTGCCGCCCAAACCGCAGCAGGAAATGTTATTCGAACAGTAGCGAAGCAAGGCATGCAACGAGCAGAAGTCATGATAAAGGGGCCCGGTCTCGGAAGAGATGCGGCATTAAGAGCTATTCGTAGAAGTGGTATACTCTTAAATTTTATACGGGATGTAACCCCTATGCCACATAATGGGTGTAGGTCCCCTAAAAAACGACGTGTGTAA	417	0.4556	MAKPIPKIGSRKNGRIGSRKHARKIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNVIRTVAKQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFIRDVTPMPHNGCRSPKKRRV	138

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst10g02245	138	Gene3D	Ribosomal protein S11	9	138	IPR036967	GO:0003735\|GO:0005840\|GO:0006412
	Arst10g02245	138	PANTHER	40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11	24	136	IPR001971	GO:0003735\|GO:0005840\|GO:0006412
	Arst10g02245	138	Pfam	Ribosomal protein S11	28	137	IPR001971	GO:0003735\|GO:0005840\|GO:0006412
	Arst10g02245	138	PIRSF	RPS11p_RPS11a_RPS14e_RPS11o	7	138	IPR001971	GO:0003735\|GO:0005840\|GO:0006412
	Arst10g02245	138	Hamap	30S ribosomal protein S11 [rpsK].	11	138	IPR001971	GO:0003735\|GO:0005840\|GO:0006412
	Arst10g02245	138	FunFam	30S ribosomal protein S11, chloroplastic	11	138	-	-
	Arst10g02245	138	MobiDBLite	consensus disorder prediction	1	23	-	-
	Arst10g02245	138	SUPERFAMILY	Translational machinery components	23	138	-	-
	Arst10g02245	138	ProSitePatterns	Ribosomal protein S11 signature.	106	128	IPR018102	-
	Arst10g02245	138	NCBIfam	30S ribosomal protein S11	19	135	IPR019981	GO:0003735\|GO:0005840\|GO:0006412

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst10g02245	Arst-Chr10	79769829	79770426	Proximal

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst10g02245	28	128	Cytoplasmic Ribosomal Protein Gene Family	AT3G52580	38.182	6.01e-15	65.5

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst10g02245	K02948		-	gmx:3989330	262.307

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