Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g02204 ATGGAGTTCGACGAGTATGACTACTTGGAGAAGACGGTGGAGGACCATGACGACAGAGATTCGTCTAAGAAGACCAAAAAAGACAGCTCCGAGAAAACCTACCGGAAGCGCGACGAGCTCGACGACGATCTAGACGCTGCCGCCTACGACGGGCGCATCAAGAAATCCAGGGCCGAGGAAGAGAACGGCTCCAGGAAGGATCGGGATGGCCGCGATAGGGAGAAGGAGAAGGAGAAGGAAAGGGAGAGAGAGAGAAAGGAGAGGGAGAGGGACAGAGAACGAGAGGAGGGGTCCAGGAGGAGCAGGTCTCGTTCCGAGCGAGACAGAGACAGAGAGAGGGAACGTGATTTTGACTCGAGAGATGGCCGGAGACAGAGGGAAAAGAAAGAAGCTGCAGAGCCTGAGGCAGATCCCGAAAGGGATCAGCGAACTGTTTTTGCCTACCAGATGCCTTTGAAGGCAACAGAGAGGGATGTTTATGAGTTCTTCTCTAAAGCTGGCAAGGTGAGGGATGTTCGTCTTATCATGGATAGGAACTCAAGAAGATCTAAAGGAGTTGGGTATATTGAATTTTATGATGTGATGTCAGTGCCAATGGCAATTGCTCTCTCTGGCCAACTTCTCCTTGGACAGCCTGTGATGGTTAAACCTTCTGAGGCTGAAAAGAACCTTGTTCAATCTAATACTACTAGTGGAGCTGCTGGTGTAGCAGGACCATATGGAGCTGTAGACAGGAAACTGTATGTAGGGAACCTTCACTTCAACATGACCGAGAGTCAACTGAGAGAGATTTTTGAGCCATTTGGTCCAGTGGAGCTTGTACAATTGCCACTTGATCTGGAAACTGGACATTGCAAGGGTTTTGGGTTTGTTCAATTTGCTCATCTTGAGCATTCCAAGGCAGCTCTGAGTTTAAATGGAAAACTGGAAATTGCTGGCAGGACTATCAAGGTCTCATCTGTAACTGATCATGTTGGAAGCCAAGATACAACTGCGAAATCTGCAGACTTCGATGATGATGAAGGTGGATTGGCTTTAAACGCTCAATCAAGAGCTTTACTTATGCAGAAGCTGGATCGCTCTGGCATTGCTGCTAGCATTGGCGTTCCACCAGTTGTGAATGGGTCGGCCCCTGCACAGCAAGCTGTTAGCTTGCCTATTGGTAATCCAGGCATAATACCAGCACCAACTCTCCCAACACAACTTATGACTAACCCAGTTGCCGAGCCTGTTGGAACCCCCAGCGAGTGTTTACTGTTGAAGAATATGTTTGATCCGGCCACTGAGACAGAACCAGATTTTGATTTAGACATTAAAGAGGATGTAGAAGAAGAGTGTTCTAAGTATGGGCGGGTGAAGCATATCTCTGTTGACAAAAACAGTGCAGGTTTTGTGTATTTGCAGTTTGAAACAGTGGAAGCAGCAAGTGCCGCTCAACGTGCATTGCACCTGAGGTGGTTTGCACGTAGATTGATTTCAGCTTTGTTCATGCAACCTCAGATGTATGAAGAGAAGTTTAAAGGGGAGGTTTGA 1533 0.4781 MEFDEYDYLEKTVEDHDDRDSSKKTKKDSSEKTYRKRDELDDDLDAAAYDGRIKKSRAEEENGSRKDRDGRDRERSSRDKDRHRHRSSDRERDGERSSRDRDRDSERSSRDREREREKSKERDRRERDKEREKRERDREKEKEKEKEKERERERKERERDREREEGSRRSRSRSERDRDRERERDFDSRDGRRQREKKEAAEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTTSGAAGVAGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVELVQLPLDLETGHCKGFGFVQFAHLEHSKAALSLNGKLEIAGRTIKVSSVTDHVGSQDTTAKSADFDDDEGGLALNAQSRALLMQKLDRSGIAASIGVPPVVNGSAPAQQAVSLPIGNPGIIPAPTLPTQLMTNPVAEPVGTPSECLLLKNMFDPATETEPDFDLDIKEDVEEECSKYGRVKHISVDKNSAGFVYLQFETVEAASAAQRALHLRWFARRLISALFMQPQMYEEKFKGEV 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g02204 579 MobiDBLite consensus disorder prediction 1 212 - -
Arst10g02204 579 SUPERFAMILY RNA-binding domain, RBD 313 391 IPR035979 GO:0003676
Arst10g02204 579 CDD RRM3_RBM39_like 484 566 - -
Arst10g02204 579 SMART rrm1_1 213 285 IPR000504 GO:0003723
Arst10g02204 579 SMART rrm1_1 315 388 IPR000504 GO:0003723
Arst10g02204 579 SMART rrm1_1 486 563 IPR000504 GO:0003723
Arst10g02204 579 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 407 503 IPR029123 -
Arst10g02204 579 Gene3D - 182 310 IPR012677 -
Arst10g02204 579 CDD RRM1_RBM39_like 213 285 - -
Arst10g02204 579 FunFam Splicing factor CC1-like 136 297 - -
Arst10g02204 579 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 212 289 IPR000504 GO:0003723
Arst10g02204 579 NCBIfam splicing factor, CC1-like family 77 575 IPR006509 GO:0003723|GO:0005634|GO:0006397
Arst10g02204 579 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 314 392 IPR000504 GO:0003723
Arst10g02204 579 FunFam Splicing factor CC1-like 298 403 - -
Arst10g02204 579 Coils Coil 120 165 - -
Arst10g02204 579 Gene3D - 480 578 IPR012677 -
Arst10g02204 579 Gene3D - 311 406 IPR012677 -
Arst10g02204 579 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 575 IPR006509 GO:0003723|GO:0005634|GO:0006397
Arst10g02204 579 SUPERFAMILY RNA-binding domain, RBD 480 567 IPR035979 GO:0003676
Arst10g02204 579 MobiDBLite consensus disorder prediction 9 211 - -
Arst10g02204 579 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 508 560 IPR000504 GO:0003723
Arst10g02204 579 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 316 386 IPR000504 GO:0003723
Arst10g02204 579 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 219 281 IPR000504 GO:0003723
Arst10g02204 579 SUPERFAMILY RNA-binding domain, RBD 205 293 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g02204 Arst-Chr10 77707490 77712949 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g02204 211 378 Eukaryotic Initiation Factors Gene Family AT1G49760 30.814 5.96e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g02204 K13091 - gmx:100802446 681.404