Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g02200 ATGTGTATTGCAAAGGTGGCGAATCCTCAAGAGAAAGGAAACAAGGTTGTTGAGAAGAGGGAATTGGAAGTTGATGAGAGGATAAACAACAACAATTCTACGTTGTCATCATCAATGCATATGATATTCCCAGGTTTGAATAGGGAGGAGGAGATGTCTGCCATGGTTTCGGCTTTGACCCATGTTGTCTCTGGTGAAGTTCCAACCAGTGCAGGTGACGATTATTCACTTCCAACAAGTAACATGACTTATGGTTCTTCAACATTTTCTAATTATGTTGTTGGAAGCGGCTCTTCTTCTATCAAGAGAACTAGGCAGCAAGATGATATATCCTTTGTTGACCACTTCTCTTCATCACATGGTGTAACTTCTTCATCCCCTACTACTATTCATACAACAATGAATAGAGAATGTTCAAGAGAAAGTGGAAGTGGGAGTGGAGAGGTGGAAGGAGAAAACAGGGGAAGGACAGTCTATGAATACAGAGCAAGAGAAGAGAATGTGAGAGAGGAAGAGCCAAGAAGGAAATACAGAGGCGTGAGGCAGAGGCCATGGGGCAAGTGGGCAGCCGAGATCAGAGACCCATTCAAAGCCGCCAGAGTCTGGTTAGGCACCTTTGACACTGCCGAGGCCGCGGCCAGAGCCTACGACCAAGCCGCCCTCCGTTTCCGGGGCAACAAGGCCAAACTCAACTTCCCCGAAAATGTCACGCTCCTCCGCCACGCGCCACCGCAAATCACTGCTTCTTCGCTCGTGGCCATTCCAACTTCCACCGAAGCCATTGTTCACAGTGAGCCTCTTATTAGCACTACTTTGCATGGTTTTTCTTTTTCTTCTTCTTCTTCCGCGGGTTTGTATGGGAATTTTCCCACCATGGATTCCACTATGACGGTTATGGCTTCAAGTGTGGCTTCTCATCTTCGTCATTCTTCTCTGTCTTCAACGCAAGCTTCGCCGCCGTTCTTGTCTTCCTCTTCTGCGTTCGGTTCCACTAAGCAGTTGCCGGCGGCGTNGTTGCCGGCGGCGTGGTCATCGGCTTCCGGTAACAGCTCTTCTTCGTCGGGATAG 1068 0.485 MCIAKVANPQEKGNKVVEKRELEVDERINNNNSTLSSSMHMIFPGLNREEEMSAMVSALTHVVSGEVPTSAGDDYSLPTSNMTYGSSTFSNYVVGSGSSSIKRTRQQDDISFVDHFSSSHGVTSSSPTTIHTTMNRECSRESGSGSGEVEGENRGRTVYEYRAREENVREEEPRRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDTAEAAARAYDQAALRFRGNKAKLNFPENVTLLRHAPPQITASSLVAIPTSTEAIVHSEPLISTTLHGFSFSSSSSAGLYGNFPTMDSTMTVMASSVASHLRHSSLSSTQASPPFLSSSSAFGSTKQLPAAXLPAAWSSASGNSSSSSG 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g02200 355 SUPERFAMILY DNA-binding domain 176 234 IPR016177 GO:0003677
Arst10g02200 355 FunFam Ethylene-responsive transcription factor 2 175 234 - -
Arst10g02200 355 ProSiteProfiles AP2/ERF domain profile. 176 233 IPR001471 GO:0003700|GO:0006355
Arst10g02200 355 SMART rav1_2 176 239 IPR001471 GO:0003700|GO:0006355
Arst10g02200 355 MobiDBLite consensus disorder prediction 121 156 - -
Arst10g02200 355 PRINTS Ethylene responsive element binding protein signature 177 188 IPR001471 GO:0003700|GO:0006355
Arst10g02200 355 PRINTS Ethylene responsive element binding protein signature 199 215 IPR001471 GO:0003700|GO:0006355
Arst10g02200 355 CDD AP2 176 235 IPR001471 GO:0003700|GO:0006355
Arst10g02200 355 Gene3D AP2/ERF domain 175 235 IPR036955 GO:0003700|GO:0006355
Arst10g02200 355 Pfam AP2 domain 176 225 IPR001471 GO:0003700|GO:0006355
Arst10g02200 355 PANTHER DNA-BINDING DOMAIN 136 310 IPR044808 GO:0003700|GO:0009873
Arst10g02200 355 MobiDBLite consensus disorder prediction 121 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g02200 Arst-Chr10 77330764 77332556 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g02200 170 243 AP2-EREBP Transcription Factor Family AT5G13330 71.605 1.06e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Arst10g02200 AP2 3.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g02200 - - adu:107470342 597.816
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst10g02200 10 77330764 77332556 Arst10g02200 10 77330764 77332556 ECH
Arst3g04076 3 114384244 114386141 Arst10g02200 10 77330764 77332556 ECH