LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst10g02189	ATGAAAAGGGAGAGTAGGAGACAGAGTGTGAAGGAGAATAATAATAATAATATTAAGAATAATTTATCCGGAGCAGTTGAACAGCAGGTTTTGCGAGGTGGAAAAGAAAGTTTGACTGCTACCAAAGAAGAGAAGAAGATTGAGAGAGAAGAGGATGATGAAGAGAAGAATATTGCAGGATATGAATTTGTTGATGGATGGCCAAAGTGGTTGGTTGATAATATCCCAAGATATGTTCTTGATACTCTTGTTCCAAAGAGTGCTGATTCCTATATAAAACTGGGAAAGGTAGGATGTGGAACATATAGCAATGTGTACAAAGCAAGAGATAAGCGAAGTGGGAAGATTGTTGCTTTGAAGAAAGTGAGGTTTGACACGTCGGATCCTGAGAGTATAAAGTTTATGGCGAGAGAGATTATGATACTTCAGACATTAGATCATCCGAATGTGATCAAGCTTGAAGGAGTAGCAACATCAAGAATGCAATACAGTATATATTTGGTTTTTGAGTTCATGCATGCTGACCTTGCACGAATTATAGCCCGATCGGCGGTGAGACTAACTGAACCACAGATAAAGTGTTACATGCAAGAACTGCTTTGTGGGCTCCAATACTGTCACGAAAAGGGTGTTATCCACCGAGATATTAAATCTTCAAACTTGTTAGTAGACACAAGAGGGGTGCTGAAAATTGCAGATTTTGGTCTTGCACATTCTTTTGACATCAAATCCAATGGCCCTCTTACAAATAAAGTGGTGACACTTTGGTATAGAGCTCCTGAACTTCTCTTAGGTTCAACTAATTATGGATTTGGAGTTGATCTCTGGAGTGCTGGATGCCTATTGGCTGAAATGTTCGTTGGAAGACCGATAATGCCCGGAAGAACAGAGGTTGAACAGCTTCACATGATCTTCAAACTTTGTGGTTCTCCTTCAGATAATTACTATAGAAAACTGAAGCTAACAAGCAGCCATCGTCCGTCACAACGTTACAGACCTAACTATAACGGAAACTTCCCGAACCTTCCTTCGTCTTTCCTTCATCTCTTGGCCACGCTTCTTGATCTTGACCCTTCACACCGTGGCACCGCTGCCTCTGCTCTTCGAAGTGAATTTTTCAATTCAAGTCCGTTACCGTGCGACCCTTCAGACTTACCAGCAATCTACAATAATAATAATAATGATGAGGATGAACGAATTCATCAAAAGAGACGTAGACACAGGGTTCCGAAAAGAGGGCAAGTGTCTCAACCCAATACAAATCATGTTAGTCAATTGGAAAAGAACAATCAAACAGCTGAACATTTCAAGAGAGATTCAGAATCGTCCACCAAAGAGGATAAGAAAGAACAAGAGAAGCAGGGGCAAGAAACAGGCACTGTTAGTGCAAGCAGCACATCATGGAGCTTCAAAAATATTATGAACATGAATAATGCATCGTCAATAACATCATCAATTTTTTCTAGTAATGACAAAACTGAAGCACATCCCAATTATGCTCTCTTACATTCATATATAATTGGAGTGATCAATCACAATAATAAGAACGAAGCCAATAATAAATCTCATCAACGTAAAGCGTTGGATCTAAGATTTGATATAGAGAAGCTATCAAATCTTTTTGAATAA	1629	0.3923	MKRESRRQSVKENNNNNIKNNLSGAVEQQVLRGGKESLTATKEEKKIEREEDDEEKNIAGYEFVDGWPKWLVDNIPRYVLDTLVPKSADSYIKLGKVGCGTYSNVYKARDKRSGKIVALKKVRFDTSDPESIKFMAREIMILQTLDHPNVIKLEGVATSRMQYSIYLVFEFMHADLARIIARSAVRLTEPQIKCYMQELLCGLQYCHEKGVIHRDIKSSNLLVDTRGVLKIADFGLAHSFDIKSNGPLTNKVVTLWYRAPELLLGSTNYGFGVDLWSAGCLLAEMFVGRPIMPGRTEVEQLHMIFKLCGSPSDNYYRKLKLTSSHRPSQRYRPNYNGNFPNLPSSFLHLLATLLDLDPSHRGTAASALRSEFFNSSPLPCDPSDLPAIYNNNNNDEDERIHQKRRRHRVPKRGQVSQPNTNHVSQLEKNNQTAEHFKRDSESSTKEDKKEQEKQGQETGTVSASSTSWSFKNIMNMNNASSITSSIFSSNDKTEAHPNYALLHSYIIGVINHNNKNEANNKSHQRKALDLRFDIEKLSNLFE	542

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst10g02189	542	ProSitePatterns	Protein kinases ATP-binding region signature.	97	120	IPR017441	GO:0005524
	Arst10g02189	542	MobiDBLite	consensus disorder prediction	37	53	-	-
	Arst10g02189	542	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	211	223	IPR008271	GO:0004672\|GO:0006468
	Arst10g02189	542	MobiDBLite	consensus disorder prediction	1	53	-	-
	Arst10g02189	542	PANTHER	CELL DIVISION PROTEIN KINASE	89	379	-	-
	Arst10g02189	542	FunFam	probable serine/threonine-protein kinase At1g54610	78	173	-	-
	Arst10g02189	542	ProSiteProfiles	Protein kinase domain profile.	91	373	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Arst10g02189	542	SUPERFAMILY	Protein kinase-like (PK-like)	86	381	IPR011009	-
	Arst10g02189	542	MobiDBLite	consensus disorder prediction	383	465	-	-
	Arst10g02189	542	Coils	Coil	35	55	-	-
	Arst10g02189	542	Gene3D	Transferase(Phosphotransferase) domain 1	174	413	-	-
	Arst10g02189	542	MobiDBLite	consensus disorder prediction	431	455	-	-
	Arst10g02189	542	Pfam	Protein kinase domain	91	373	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Arst10g02189	542	SMART	serkin_6	91	373	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Arst10g02189	542	Gene3D	Phosphorylase Kinase; domain 1	81	173	-	-
	Arst10g02189	542	FunFam	Mitogen-activated protein kinase	172	391	-	-
	Arst10g02189	542	MobiDBLite	consensus disorder prediction	413	430	-	-
	Arst10g02189	542	MobiDBLite	consensus disorder prediction	11	27	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst10g02189	Arst-Chr10	76541701	76545111	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst10g02189	86	444	Core Cell Cycle Gene Families	AT5G10270	41.207	1.21e-93	293

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Arst10g02189		Pkinase	2.4e-68	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst10g02189	K08819		-	gmx:100782603	565.459