Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g02135 ATGTCCAGAGAAAGGGAGAGATTTGAGGAGATAGGGAAGAAGATAAAGAGGGAAGGAGATAATGTTTCAAGTCAAATGGGAAGAAGACACATGTTAGGGCCACCAGGAACCCTAAACACAATTACACCATGTGCAGCATGCAAGCTACTGCGACGAAGATGCGCACAAGAATGCCCCTTCTCTCCATATTTCTCACCTCATGAGCCCCAAAAGTTCGCTTCTGTCCACAAAGTCTTTGGTGCCAGCAACGTCTCCAAGATGCTCATGGAGGTACCGGAGTGCCAAAGAGCTGATGCAGCGAATAGTCTAGTTTATGAGGCTAATGTGAGGCTAAGAGATCCAGTTTATGGATGCATGGGTGCAATTTCAACATTGCAGCATCAAGTTCAATCTTTACAAGCTGAACTCAATGCAGTGAGGTCAGAAATACTTAAATACAAACTCAGAGAAGCTAATAACAATATCATTATTCCCTCCTCCCACCATCATCTTCCTATGCTCCCTTCATCCGGGTCTGCTGTTTCCGTCGCTGCTCCTCCGCCCCCGCCTCCTCCTCCGCCACCACCACTTCCTCCTAATTCTCTCCCTCCCATTTCTTCCTCTTCTTCCTCCATGTACATCCAACAACAACAGAGGCCTCCCACCAACTATAGCAGAATTCCAAGTGACAATATTTCTTATTTTGGTTAA 690 0.4623 MSRERERFEEIGKKIKREGDNVSSQMGRRHMLGPPGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPECQRADAANSLVYEANVRLRDPVYGCMGAISTLQHQVQSLQAELNAVRSEILKYKLREANNNIIIPSSHHHLPMLPSSGSAVSVAAPPPPPPPPPPPLPPNSLPPISSSSSSMYIQQQQRPPTNYSRIPSDNISYFG 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g02135 229 ProSiteProfiles LOB domain profile. 42 143 IPR004883 -
Arst10g02135 229 Coils Coil 122 149 - -
Arst10g02135 229 PRINTS Wilm's tumour protein signature 175 189 - -
Arst10g02135 229 PRINTS Wilm's tumour protein signature 125 141 - -
Arst10g02135 229 MobiDBLite consensus disorder prediction 168 229 - -
Arst10g02135 229 MobiDBLite consensus disorder prediction 175 196 - -
Arst10g02135 229 MobiDBLite consensus disorder prediction 197 229 - -
Arst10g02135 229 Pfam Lateral organ boundaries (LOB) domain 43 140 IPR004883 -
Arst10g02135 229 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 39 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g02135 Arst-Chr10 74292164 74294093 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g02135 28 174 AS2 family AT2G40470 82.313 1.09e-75 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Arst10g02135 LOB 2.1e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g02135 - - ccaj:109797870 311.997
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst10g02135 10 74292164 74294093 Arst10g02135 10 74292164 74294093 ECH
Arst10g01186 10 14725907 14734564 Arst10g02135 10 74292164 74294093 ECH