Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g02105 ATGCATATAATGGCTCTTCACCATCCACACCGTTTATTACTAGACACAAGCTCAAGCTCTGGTGATGTAAATAGGACAAAAGATTCCTCCTTAGGCGACCCGAATTTTGACACCAACATGGTGATTATCTTGGCTGCTTTGCTGTGTGCACTCATATGTGCTTTGGGACTCAACTCAATAGTGCGTTGCGCTCTAAGATGTAGCCGAAGGTTGGCTTTCGAGACCCCGGACGAAGCAGCAGCGCGATTAGCGGTTAAAGGGTTGAAGAAGAGTGCTCTGCATCAGATTCCTATAGTTGTTTATGGTAATTCAGGTGCTACTAATAGTTGTATTAAAGCCACTGATTGTGCAATTTGCCTAGGGGAGTTTATGAATGGGGAAAAAATTAGAGTGCTACCAAAATGTAACCATGGATTCCATGTTAAGTGTATAGATACATGGCTGCAGTCACACTCCTCTTGCCCAACTTGTAGAAGGTGTTTGATTGAGCAACCAGCAACAAGTTCTGAAGTTGCAACTGTGGCTGTTGCTGTGGCTACAGCTTCAGGAACAAGGAATAGTCATGCAGATAATAATGCTTCAGGAGGGTATCAACCTGATCATGTAGCTGTAGTTGTTGATGAGATTAGCTAG 633 0.436 MHIMALHHPHRLLLDTSSSSGDVNRTKDSSLGDPNFDTNMVIILAALLCALICALGLNSIVRCALRCSRRLAFETPDEAAARLAVKGLKKSALHQIPIVVYGNSGATNSCIKATDCAICLGEFMNGEKIRVLPKCNHGFHVKCIDTWLQSHSSCPTCRRCLIEQPATSSEVATVAVAVATASGTRNSHADNNASGGYQPDHVAVVVDEIS 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g02105 210 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 162 IPR013083 -
Arst10g02105 210 PANTHER RING-H2 FINGER PROTEIN ATL78 27 171 IPR044602 GO:0016567|GO:0016740
Arst10g02105 210 CDD RING-H2_EL5-like 115 158 - -
Arst10g02105 210 SUPERFAMILY RING/U-box 115 165 - -
Arst10g02105 210 Pfam Ring finger domain 115 158 IPR001841 -
Arst10g02105 210 ProSiteProfiles Zinc finger RING-type profile. 116 158 IPR001841 -
Arst10g02105 210 SMART ring_2 116 157 IPR001841 -
Arst10g02105 210 FunFam E3 ubiquitin-protein ligase ATL6 77 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g02105 Arst-Chr10 72304871 72306585 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g02105 11 166 C3H Transcription Factor Family AT3G10910 56.548 3.55e-55 172