Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g01943 ATGTCACGGCCGAGGCAGAACAAGATGTTGATGAATCCAAACACTGCCAAACATGTAATTGGTGACACAACCTATACCAAGATCTTTGTTGGAGGCTTAGCTTGGGAAACAAAAAGAGACACTCTGAAACGTTATTTTGATCAGTTTGGAGAGATCTTAGAAGCTGTTGTCATCACTGACAGAAACTCTGGAAGATCAAAAGGATACGGCTTTGTAACATTCAAGGACCCAAATTCTGCAATAAGGGCTTGTCAGAATCCATATCCTGTGATAGATGGAAGGAGGGCTAATTGTAATCTTGCATCTCTTGGTGCACAAAAAATTGATCCATCATCTATGACAGCTACTAGACAAAAATTCAGTAGCCCTTCTTGGAATACAGCACCAATTCCAGTTCATCAAGGAACCTCCACTTATTATAATCAGCATATTCCACAGTATACATTTCCTTATCCACCCTACAGGTATCCAGGTTACCCACCCCAACAGGAAGTATATGAAATGCAGAATTACTATAATGCATATGGTGGACAACACTTTCCATTTCGTTGGTTACCAGCATATTACCAACCAATTTATGGGCTAAGTAGGCATCAATTTGTTCCAACAACAGCTTATGTGAAAAAGACACAATTCCCTGATATGTCACCTCAGGAGTTCACACCTACTGTTGCTTCATCAGAACCTATTTCAGCTTCTTCATCAATTTCTACCACTGGATTAATAACAGGAACTGTAGATGCAGGAGGAGGAGGAGGAGTACTAGGATCACAACAAGAACAGAAATCATCATCTTCAGGTTAA 804 0.4017 MSRPRQNKMLMNPNTAKHVIGDTTYTKIFVGGLAWETKRDTLKRYFDQFGEILEAVVITDRNSGRSKGYGFVTFKDPNSAIRACQNPYPVIDGRRANCNLASLGAQKIDPSSMTATRQKFSSPSWNTAPIPVHQGTSTYYNQHIPQYTFPYPPYRYPGYPPQQEVYEMQNYYNAYGGQHFPFRWLPAYYQPIYGLSRHQFVPTTAYVKKTQFPDMSPQEFTPTVASSEPISASSSISTTGLITGTVDAGGGGGVLGSQQEQKSSSSG 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g01943 267 SUPERFAMILY RNA-binding domain, RBD 5 106 IPR035979 GO:0003676
Arst10g01943 267 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 85 IPR000504 GO:0003723
Arst10g01943 267 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 26 103 IPR000504 GO:0003723
Arst10g01943 267 PANTHER BOULE-RELATED 17 216 - -
Arst10g01943 267 MobiDBLite consensus disorder prediction 241 267 - -
Arst10g01943 267 SMART rrm1_1 27 99 IPR000504 GO:0003723
Arst10g01943 267 CDD RRM_RBM24_RBM38_like 26 101 - -
Arst10g01943 267 Gene3D - 2 113 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g01943 Arst-Chr10 64656824 64659208 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g01943 22 102 C2H2 Transcription Factor Family AT2G19380 43.210 2.69e-15 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g01943 - - adu:107469851 460.685