Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g01899 ATGGAACGTGACGGTGGCCATAAACAAACTTCTCACAAAACTCCGTACACTCAGCTTGAACAGGTTAGCTCTGATTTCTTTCTAGCAATTGGCCTGCAAGAGCAAAACGCAACAATATTCACAGCGCTCGCAGCGACACTGGAAAGCGAAGGATCCTCCTCGTCGCTTGATAATGAGCAGGAAGACGATGATAACGCTGATTTCTTCACGAGCTATGAGTTTGAAACGGAGGACCTTCAGTTTCTTGAAAGCGAAGGAAGCAACTACGGTGATGACGAAGACATGGATGACTTTGACTTCGACGTGGACGAATTGACATACGAAGAGTTAATTGAGTTGGAAGACTTTATAGGGAAGCAGAAGAGAGGGTTATCAGCAAATGAGGTTTCTTCGTGCTTGCATTCCTACACCTTCGATTCTGTTAACGAGAGGAAAAACAGTGGAACCGATCGGTGCGTGATTTGCCAGATTGAGTATGAAGAAGGTGAAGCGTTGGTGGCACTTCGTTGCGGACATCCTTTCCACACGGATTGCATAAGCAAGTGGCTTCAAGTAAGAAAGGTTTGCCCAATATGTAGCAGTGAAATTTCGGCTCCCGAGATTGTCAATAAACAAGAACCCTTCATTGTTTAG 633 0.4518 MERDGGHKQTSHKTPYTQLEQVSSDFFLAIGLQEQNATIFTALAATLESEGSSSSLDNEQEDDDNADFFTSYEFETEDLQFLESEGSNYGDDEDMDDFDFDVDELTYEELIELEDFIGKQKRGLSANEVSSCLHSYTFDSVNERKNSGTDRCVICQIEYEEGEALVALRCGHPFHTDCISKWLQVRKVCPICSSEISAPEIVNKQEPFIV 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g01899 210 Pfam Ring finger domain 151 192 IPR001841 -
Arst10g01899 210 SUPERFAMILY RING/U-box 151 199 - -
Arst10g01899 210 ProSiteProfiles Zinc finger RING-type profile. 152 193 IPR001841 -
Arst10g01899 210 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 51 197 IPR033276 GO:0004842|GO:0016567|GO:0046621
Arst10g01899 210 FunFam E3 ubiquitin ligase BIG BROTHER-related 116 199 - -
Arst10g01899 210 SMART ring_2 152 192 IPR001841 -
Arst10g01899 210 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 199 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g01899 Arst-Chr10 61914929 61915683 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g01899 99 196 C3H Transcription Factor Family AT3G63530 47.475 5.95e-28 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g01899 K19045 - gmx:100777284 221.861