Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g01840 ATGATGGCTACTCCAACTAAACCAATGGCCGTAATGTTGTCTGAATCTTTGGAACACAAGGGAAAGGATATCACTGAATTAAATGGTAACATACATCAATCCCCTATAAGTCAACAGCCCCATAGCTCCTCGGATGGTTCAGTAGCTATTCTTTGGGACATTGAAAACTGTCCTGTTCCGAGTGATGTCTGCCCTGAAGACGTAGCAGGAAATATAAGGATGGCGTTGCAAGTGCATCCAGTAATTCAAGGAACTGTTATGGTATTTTCTGCTTATGGTGACTTCAACGCTTTCCCTAAGCGACTTCGAGAGGGATGTCTAAGAACTGGTGTTAATCTCATCGATGTTCCTAATGGGAGAAAAGATGCTGCTGATAAAGCAATCTTGGTTGACATGTTTTTATTTGCTCTTGACAACCCTCCCCCATCATCTATTATGCTAATATCTGGAGACGTTGACTTTGCCCGAGCACTTCACATTCTTGGACAACGGGGATACACTATAATTCTTGTCATCCCTTCTGGGGTGGGTGTTTCATCTGCTTTATGCAATGCCGGAAAGTTTGTCTGGGATTGGCCTAGCGTTGCTCGTGGAGAAGGATTTGTTCCCCCGGCAAAGGCTTTAGTACCACCTCGTGGAGGTTCAGTTGAGGTTGCTGGATATTTGATGGGGTGCCATATTAATGACAACTTCGAGGGACAAAATGAGGAAGAAGCAATAGTTTATAGAGGGATGTCACAGAGATTATATAACTCAAGGGATTTCTCTATGGTTTCACAATCTCTATCTGAATACAATTGTACCACATCGAACATGGCTGGCTTACCGACAACTATGAGATCACACAGCCTTCCACCTGGGATGATTGATGTTTCAGGAATATCTATGCCTTCTAGTGACAATAATGAAGGCCAGCTTTGGGGCCCTATGTCTAGCGATTTAAATGTTCTCAAAGGCCAGTTGGTAAAGTTGCTTGAACTTTCTGGAGGGTGCCTGCCTCTGGCTCGAGTTCCAACAGAGTATCAGAAAGCTTATGGGAGAACTCTTTATGTATCTGATTATGGAGCAATTAAATTAGTCAATCTTTTCAAGAAGATGGGTGATACAATGGCAGTGGAAGGGAAAGGTCAGCGTAAATTTGTGTATCTCAGAAACTTCAAGGTAGGCCCGAGCGCTCCCCCATTGGCTCTAGCAAAGAAAGACAAGAAAGGAAAGGGGCTTCCAGAAGAGAATATGAATACTGTCACCGGTGGTGTCTCTTCAGATGAGTTCTCAGATGAAGAAAGACTAGTCATGGAAGAACCTGATGAGAGAAATTGTGTAGGAAAGGGCAGTCAAAGGAGAGCAGCTATCAATGACCGTGCTCTTGAGCAGTTCAAGTTCGAGCTTCAAGAGATTCTAGTCAGCTACTCGTGCCGAATATTCCTAGGTTGTTTTGAGGATATATACCAACAAAGGTACAAGAGACAATTGGAATATCAGAGACTTGGAGTGAACAAGTTGGAGGATTTGTTTGAGAAAGTCAATGATATTGTAGTATTGGTTGAGGAACCAGGAAGCAAGAGGAAGTTCCTTGCTCCAATGGGGGGTTAG 1593 0.4344 MMATPTKPMAVMLSESLEHKGKDITELNGNIHQSPISQQPHSSSDGSVAILWDIENCPVPSDVCPEDVAGNIRMALQVHPVIQGTVMVFSAYGDFNAFPKRLREGCLRTGVNLIDVPNGRKDAADKAILVDMFLFALDNPPPSSIMLISGDVDFARALHILGQRGYTIILVIPSGVGVSSALCNAGKFVWDWPSVARGEGFVPPAKALVPPRGGSVEVAGYLMGCHINDNFEGQNEEEAIVYRGMSQRLYNSRDFSMVSQSLSEYNCTTSNMAGLPTTMRSHSLPPGMIDVSGISMPSSDNNEGQLWGPMSSDLNVLKGQLVKLLELSGGCLPLARVPTEYQKAYGRTLYVSDYGAIKLVNLFKKMGDTMAVEGKGQRKFVYLRNFKVGPSAPPLALAKKDKKGKGLPEENMNTVTGGVSSDEFSDEERLVMEEPDERNCVGKGSQRRAAINDRALEQFKFELQEILVSYSCRIFLGCFEDIYQQRYKRQLEYQRLGVNKLEDLFEKVNDIVVLVEEPGSKRKFLAPMGG 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g01840 530 CDD PIN_limkain_b1_N_like 48 173 - -
Arst10g01840 530 CDD LOTUS 456 519 - -
Arst10g01840 530 Gene3D - 41 193 - -
Arst10g01840 530 Pfam NYN domain 48 186 IPR021139 GO:0004540
Arst10g01840 530 ProSiteProfiles OST-type HTH domain profile. 313 385 IPR025605 -
Arst10g01840 530 PANTHER LIMKAIN B LKAP 32 494 IPR024768 GO:0005777|GO:0010468
Arst10g01840 530 ProSiteProfiles OST-type HTH domain profile. 455 529 IPR025605 -
Arst10g01840 530 CDD LOTUS 314 383 - -
Arst10g01840 530 Gene3D - 451 523 IPR041966 -
Arst10g01840 530 Gene3D - 311 382 IPR041966 -
Arst10g01840 530 MobiDBLite consensus disorder prediction 398 419 - -
Arst10g01840 530 Pfam OST-HTH/LOTUS domain 456 520 IPR025605 -
Arst10g01840 530 Pfam OST-HTH/LOTUS domain 315 380 IPR025605 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g01840 Arst-Chr10 55519373 55522514 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g01840 46 198 C2H2 Transcription Factor Family AT5G61190 43.137 2.30e-28 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g01840 - - ahf:112715639 1043.88