Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g01827 ATGCAAGGTCAAAGAAGGACAACTGGATCATTCCCTGCTATTGTTGGTATGATGCAAGGGCCTAACTCGAGCGGCACTGATATGAATCATCAGTCTTCCTTGAATCATGTGCAAAGTACCGTAGATTTCCGGTTGTCAGATTATAGAGGGTCCACTGGCGAGACTGCTTGTTTACGAGCTACTGGTCCTAACATACAGAGTTTTAGTGGCTGGAATACTGGTGAACCGAGTTCTAGACTGAATCTGATCAACCAAGTCAATGATGAAGGTCTAAAATCTGAACATGGTCCATCTTCATCATGTAGTGCTACTGCCGAGGATGGTCTCAGAACAGAGGAAAGGTCATTTGAATCAAATAATATGATTTTTCCAGTTAGTTCAAATACTAATCTACATGGAAATCATTCTAGAATTCAGCCTTCTTTTTTGCGAGGATCCAGCTCCAGTCATATAACCCAGAATGGTAATCTAGATATGGAGCACACAGCACAAGCTGCTAACCGTGGGAAAGGCATAGCAGCAAGTAGCAGTGTGAATCACAATGATAGTGGTGGATATGATAGAGAGCAAACAGCATTCAGCAGTGCTTCATACAATCGTCATACTGGAACTTCATCCAAAAACCCTGGATTCATGACTTGGGGAAATAGTGGCAGTTCAAGTTCCGCTTTAGTTAATTGGGGTTCTTCCTGCAAGAGAAAGGCCCTTGAAGGTAGTTCTGGTCAACTGTGTACTGGAGGAAGCTCAAACACTCTTTTACAATCCGAAAATGGATGTTGGCCCACTAATCCTGTTGATCTTAATGTTTCAAGCAGTTTAAATGTTTCAATGCCCTTAGAGGATGTTCCTGTCACTCTTCCTCCATTACAGCTGAACTTGAGAAGTGAAGTGAGCCAAGGAGCAACTGATGCATTTCCCTTAATAAATGTCCCAGAAAATGTGGAAAGGCCTCTCAGAAACTTTGATAGGAGAATGGCCCATGTACAGCATCAGGAATCTATACCTCTCAATTTACCATCAACAGTGAGTTCTAGGCATCATAATCATTCTTCTCCCCATCAAATACCTGGCTCCCACTCATTTAATGATTCTTTGGAATTGAGGTTAACGCCTGGAGTAAATGCTGCTAATTCTGGTGCTCCTCAGAACCAGTCACCTCCCCTTAACATGCCTCCTTTTCCTTGGAATAGAGCTTCTAACCCTAGAGGGGCTAGATCTTCAACTTCTCATAACTCTGTAGAAAGAGTCGTACAGGAAGATTTTAATATAAGAATTTTTCCAAGAGAGAGTTCTGGGCACCCGACGAATGTACCTGCACCCACAGTACATGAACCAACACCATGGCGTACATCCTCTGCTAATGTAAACAATTCTGGAGGTGTACCTACTACATCTTGGATGGGATCTAGTTCAAACATCGTTCCATTACCTAATCCCAGCTGGATTGTTAACCCTGAAGTCCCTACAGATAATCTGCAAAGATTGTCAGAGTTCAGTCCTTGGTCTCTTTTTCCATCAATTAGCTCAGCATCCAGTGTTCAGAATGGTCATTCTGCTCCATCCTCTTCAGGATCTTCTTCTATTACTCAGGGGTCCCGCAACAATCAACCATATCTAAGAGCAGCATTGTTGATGGAAAGGAGGGGTGGCGATGTACTCTCTACTCCGCGAGCATTAACCGTTGACAATGAGGGAAGACGCCGACTAATATCTGAGATTCGCCAAGTCTTGATTGCAATGCGGAGGGGTGATAACTTAAGGGCTGAGGATTATATGCTTTTTGACCCTTTCATATATCATGGGATGGCTGAACTGCATGACAGGCACAGAGAAATGCGCCTTGATGTTGATAACATGTCTTATGAGGAATTGTTGGCATTGGAGGAGCGAATTGGAGATGTCAGCACTGGATTGAGCGAGGATGTCATTTTGAAGTCGATGAAACAGCAAATATACATGTCTGTTATGGCGGAGTCTTCTACAGATCTTGAGCCTTGTTGTATCTGTCAGGAGGATTATACTGAAGGAGAGAATGTTGGCTCGCTAGATTGTGGACATGAATTTCACAGTAATTGCATCAAGCAATGGCTAATGCAGAAGAACCTTTGCCCCATTTGCAAAACAACAGGCTTAGCTACATGA 2142 0.4318 MQGQRRTTGSFPAIVGMMQGPNSSGTDMNHQSSLNHVQSTVDFRLSDYRGSTGETACLRATGPNIQSFSGWNTGEPSSRLNLINQVNDEGLKSEHGPSSSCSATAEDGLRTEERSFESNNMIFPVSSNTNLHGNHSRIQPSFLRGSSSSHITQNGNLDMEHTAQAANRGKGIAASSSVNHNDSGGYDREQTAFSSASYNRHTGTSSKNPGFMTWGNSGSSSSALVNWGSSCKRKALEGSSGQLCTGGSSNTLLQSENGCWPTNPVDLNVSSSLNVSMPLEDVPVTLPPLQLNLRSEVSQGATDAFPLINVPENVERPLRNFDRRMAHVQHQESIPLNLPSTVSSRHHNHSSPHQIPGSHSFNDSLELRLTPGVNAANSGAPQNQSPPLNMPPFPWNRASNPRGARSSTSHNSVERVVQEDFNIRIFPRESSGHPTNVPAPTVHEPTPWRTSSANVNNSGGVPTTSWMGSSSNIVPLPNPSWIVNPEVPTDNLQRLSEFSPWSLFPSISSASSVQNGHSAPSSSGSSSITQGSRNNQPYLRAALLMERRGGDVLSTPRALTVDNEGRRRLISEIRQVLIAMRRGDNLRAEDYMLFDPFIYHGMAELHDRHREMRLDVDNMSYEELLALEERIGDVSTGLSEDVILKSMKQQIYMSVMAESSTDLEPCCICQEDYTEGENVGSLDCGHEFHSNCIKQWLMQKNLCPICKTTGLAT 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g01827 713 MobiDBLite consensus disorder prediction 427 453 - -
Arst10g01827 713 MobiDBLite consensus disorder prediction 127 154 - -
Arst10g01827 713 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 631 710 IPR013083 -
Arst10g01827 713 MobiDBLite consensus disorder prediction 512 533 - -
Arst10g01827 713 MobiDBLite consensus disorder prediction 340 359 - -
Arst10g01827 713 MobiDBLite consensus disorder prediction 1 34 - -
Arst10g01827 713 MobiDBLite consensus disorder prediction 372 413 - -
Arst10g01827 713 MobiDBLite consensus disorder prediction 89 112 - -
Arst10g01827 713 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 227 711 IPR045191 GO:0061630
Arst10g01827 713 FunFam E3 ubiquitin-protein ligase MBR2 633 711 - -
Arst10g01827 713 ProSiteProfiles Zinc finger RING-type profile. 666 707 IPR001841 -
Arst10g01827 713 Pfam Ring finger domain 666 707 IPR001841 -
Arst10g01827 713 SMART ring_2 666 706 IPR001841 -
Arst10g01827 713 MobiDBLite consensus disorder prediction 17 34 - -
Arst10g01827 713 MobiDBLite consensus disorder prediction 169 189 - -
Arst10g01827 713 MobiDBLite consensus disorder prediction 89 106 - -
Arst10g01827 713 MobiDBLite consensus disorder prediction 166 189 - -
Arst10g01827 713 SUPERFAMILY RING/U-box 645 709 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g01827 Arst-Chr10 54111452 54116831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g01827 18 713 C3H Transcription Factor Family AT2G15530 36.474 3.32e-107 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g01827 - K19041 gmx:100809024 1085.09