LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst10g01796	ATGGGGGTTTGCACTTCAAAGCCTCACAAACCCAACCCTTACGCTTCTCGGGAACCTGAAGCTGAACCTTACGATCCCTCACAGCAAATCCCCAAAACCCCTCTCACTCCCTCCGGTGGCCGGAAAGATGACGTCATCGCCGGTAAACAGTCGCCGTTCTTCCCCTTCTACAGCCCAAGCCCTGCACACTTCCTCAAGAAGTCTCCGGCGACCGGAGGAGGGAACAAGAGTGCCAGCTCGACGCCGAGGAGGTTTTTCAGGCGACCGTTCCCGCCTCCGTCGCCGGCGAAGCACATAAGGGCTGTGTTGGCTAGACGGCAGGGAAAGAAAGCGGCAACGGCAATACCGGAGGAAGGAGAGGAGGACGGCGGAGGAGGTGCCGCCGATTTGGATAAGAGATTCGGATTCTCGAAGGAGTTCACTAGTAGGCTTGAGGTTGGGGAAGAAGTGGGTCGAGGGCATTTTGGGTATACTTGTTCTGCTAGGTACAAGAAGGGTGAGCTTAAGGGTCAGCAAGTTGCTGTTAAAGTCATCCCAAAAGCTAAGATGACAACAGCAATTGCAATTGAAGATGTGAGAAGGGAGGTTAAAATATTGCGAGCTTTGAACGGACATAAGAATCTGGTACAATACTATGATGCATTTGAAGATCAAGATAATGTCTACATTGTGATGGAGTTATGCGAAGGTGGCGAGCTTTTGGATAGGATACTATCAAAAGGAGGGAAATACTCAGAAGATGATGCGAAGGCTGTGATGGTACAAATACTAAATGTTGTCGCATTTTGTCATCTTCAGGGTGTGGTGCATCGAGATCTTAAGCCAGAGAATTTTCTGTATACGTCGAAGGATGAAAGTTCAGAGTCAGAATTAAAAGCAATTGACTTTGGGTTATCTGACTTTGTCCGACCAGATGAAAGGCTTAATGACATTGTTGGAAGTGCATACTATGTGGCCCCAGAAGTTCTCCATAGATCGTACAGCACTGAGGCTGATGTGTGGAGCATAGGCGTGATCGCATATATTCTTTTGTGTGGTAGTCGCCCATTTTGGGCCCGAACGGAGTCTGGTATCTTTAGGGCAGTTTTGAAAGCTGATCCCAGCTTCGATGAGGCTCCTTGGCCTTCTTTATCTACAGAAGCAAAAGATTTTGTCAAACGCCTACTGAATAAGGATCCACGGAAACGAATATCTGCTTCTCAAGCTCTAAGTCACCCTTGGATAAGGAATTACAATAATGTAAAAGTCCCACTTGATCTTTTAATATTTAAGCTCATGAAAATCTATATGCGATCATCATCCTTGCGTAAGGCTGCTTTAAGGGCCTTGTCCAAGACATTAACTGCTGATGAACTCTATTATCTAAGGGAGCAATTTGCATTGTTAGAACCAAGCAAAAATGGGAGCATATCCTTAGAAAACATTAGCAAGGCCTTGATGAAACATGCAACGGATGCCATGAAAGAGTCTCGCATCCCTGACTTTCTTGCCTCGCTAAATCCATTACAATATAGAAGAATGGATTTTGAAGAATTCTGTGCTGCTGCATTAAGTGTACATCAGCTCGAAGCTCTTGATCGCTGGGAACAACATGCCCGATGTGCTTACGAGCTCTTTGAGAAAGATGGAAACAGGGCTATCGTTATTGAAGAACTTGCATCGGAACTTGGGCTCGGTCCTTCTATCCCTGTTCACGTGGTTCTTCATGACTGGATACGGCACACCGATGGAAAGCTAAGCTTTCTTGGGTTTGTCAAATTATTGCATGGTGTGTCTAGCAGAAGTCTTGCAAAGGTTCAGTGA	1803	0.462	MGVCTSKPHKPNPYASREPEAEPYDPSQQIPKTPLTPSGGRKDDVIAGKQSPFFPFYSPSPAHFLKKSPATGGGNKSASSTPRRFFRRPFPPPSPAKHIRAVLARRQGKKAATAIPEEGEEDGGGGAADLDKRFGFSKEFTSRLEVGEEVGRGHFGYTCSARYKKGELKGQQVAVKVIPKAKMTTAIAIEDVRREVKILRALNGHKNLVQYYDAFEDQDNVYIVMELCEGGELLDRILSKGGKYSEDDAKAVMVQILNVVAFCHLQGVVHRDLKPENFLYTSKDESSESELKAIDFGLSDFVRPDERLNDIVGSAYYVAPEVLHRSYSTEADVWSIGVIAYILLCGSRPFWARTESGIFRAVLKADPSFDEAPWPSLSTEAKDFVKRLLNKDPRKRISASQALSHPWIRNYNNVKVPLDLLIFKLMKIYMRSSSLRKAALRALSKTLTADELYYLREQFALLEPSKNGSISLENISKALMKHATDAMKESRIPDFLASLNPLQYRRMDFEEFCAAALSVHQLEALDRWEQHARCAYELFEKDGNRAIVIEELASELGLGPSIPVHVVLHDWIRHTDGKLSFLGFVKLLHGVSSRSLAKVQ	600

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst10g01796	600	SUPERFAMILY	EF-hand	436	590	IPR011992	-
	Arst10g01796	600	ProSiteProfiles	Protein kinase domain profile.	144	408	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Arst10g01796	600	MobiDBLite	consensus disorder prediction	1	128	-	-
	Arst10g01796	600	SUPERFAMILY	Protein kinase-like (PK-like)	140	447	IPR011009	-
	Arst10g01796	600	SMART	serkin_6	144	408	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Arst10g01796	600	PANTHER	SERINE/THREONINE-PROTEIN KINASE	130	575	-	-
	Arst10g01796	600	Gene3D	Transferase(Phosphotransferase) domain 1	234	424	-	-
	Arst10g01796	600	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	268	280	IPR008271	GO:0004672\|GO:0006468
	Arst10g01796	600	FunFam	CDPK-related kinase 1	444	517	-	-
	Arst10g01796	600	Gene3D	-	448	517	-	-
	Arst10g01796	600	FunFam	Calcium-dependent protein kinase SK5	318	413	-	-
	Arst10g01796	600	Pfam	Protein kinase domain	145	408	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Arst10g01796	600	Gene3D	Phosphorylase Kinase; domain 1	146	233	-	-
	Arst10g01796	600	FunFam	CDPK-related kinase 3	136	310	-	-
	Arst10g01796	600	ProSitePatterns	Protein kinases ATP-binding region signature.	150	176	IPR017441	GO:0005524
	Arst10g01796	600	FunFam	CDPK-related kinase 1	137	232	-	-
	Arst10g01796	600	Gene3D	-	426	587	-	-
	Arst10g01796	600	CDD	STKc_CAMK	145	407	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst10g01796	Arst-Chr10	51277428	51282248	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst10g01796	1	596	EF-hand Containing Proteins	AT3G50530	72.598	0.0	933

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CDPK	Arst10g01796		Pkinase	5.5e-72	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst10g01796	K13412		-	gmx:100798913	1047.34