LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst10g01774	GGTGGAATTGCGACTGGGCCGCGCGATGTCCTAGGAGTTAGGAGCGGTTCCGACATTGGGTGTAAACCCTTGAAGAATTTGAATGGTAAAATCTGTCAGATATGTGGCGATACTGTTGGATTAACAGCCACCGGTGATGTTTTTGTTGCTTGCCAAGAATGTTCCTTCCCACTTTGTCACCGTTGCTATGAATGTGAGTGCGAGAATGGGAACCAATCTTGCCCCCAGTGCAAGACCAGATACAATAGTCACAAAGATAGTTCCCATTTGGAGGTAGATGAGGATGATTATGAAGATGATGATGATGTTGATGATATAGAGAATGAGGTAAATTATGGAGAAGGAAACATTAACAAAGCAGGGATGCAATGGGAAGAAGATGCTGATCTCTCTTCTTCGTCGGGACATGATTCTCGGATGCCAAATTCAAATCTCCATATCACAAATGGGCAGCCGCTATCTGGTGAAAAACCGTGTGCTACTCCTGATACAAAATCTGTTCAAGCTACATCTGGTCCTTTGGGTCCATCCAAGGCTAACTCACTTTCCTACACCGATTCAAAGCAGCCAGGTCTTGAGAGTGATGAAGAGGTCAGAAGAGTGCCAGAGATCGGAGGTGAATCTGCTGGACCTTCAGCTTCCCGTCCAGGCGCCGGTCCAACTGGTGGGAAAGAACGTGGTCAGGGGACTGGGGATGGTCAACGGAAGAGAGGCAGAAGCCTGGCGGACAAAGAAAACAAACGGCTAAAGAGGCTACTGAGGAACAGAGTGTCAGCTCAACAAGCAAGGGAGAGGAAAAAGGCATATTTGATCGATTTGGAAACCAGAGTCAAAGACTTGGAGAAGAAGAACTCAGAGCTCAAAGAGAGGCTTTCCACTCTGCAGAATGAGAACCAAATGCTAAGACAAATATTAAAGAATACAACAGCTAGCAGGAGAGGGAGCAACAGTGGTACAAATGCTGAATAA	969	0.4634	MSVYSQRMGASGGIATGPRDVLGVRSGSDIGCKPLKNLNGKICQICGDTVGLTATGDVFVACQECSFPLCHRCYECECENGNQSCPQCKTRYNSHKDSSHLEVDEDDYEDDDDVDDIENEVNYGEGNINKAGMQWEEDADLSSSSGHDSRMPNSNLHITNGQPLSGEKPCATPDTKSVQATSGPLGPSKANSLSYTDSKQPGLESDEEVRRVPEIGGESAGPSASRPGAGPTGGKERGQGTGDGQRKRGRSLADKENKRLKRLLRNRVSAQQARERKKAYLIDLETRVKDLEKKNSELKERLSTLQNENQMLRQILKNTTASRRGSNSGTNAE	333

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst10g01774	333	MobiDBLite	consensus disorder prediction	145	200	-	-
	Arst10g01774	333	MobiDBLite	consensus disorder prediction	240	275	-	-
	Arst10g01774	333	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	25	117	IPR013083	-
	Arst10g01774	333	Gene3D	Single helix bin	277	318	-	-
	Arst10g01774	333	Pfam	bZIP transcription factor	255	316	IPR004827	GO:0003700\|GO:0006355
	Arst10g01774	333	SUPERFAMILY	Leucine zipper domain	258	316	IPR046347	GO:0003700\|GO:0006355
	Arst10g01774	333	PANTHER	TRANSCRIPTIONAL ACTIVATOR HAC1	175	330	IPR044280	GO:0000981\|GO:0045944
	Arst10g01774	333	Pfam	Zinc-binding RING-finger	33	108	IPR027934	-
	Arst10g01774	333	MobiDBLite	consensus disorder prediction	103	120	-	-
	Arst10g01774	333	FunFam	Transcription factor HY5	277	318	-	-
	Arst10g01774	333	SUPERFAMILY	RING/U-box	29	114	-	-
	Arst10g01774	333	SMART	brlzneu	254	318	IPR004827	GO:0003700\|GO:0006355
	Arst10g01774	333	ProSiteProfiles	Zinc finger RING-type profile.	43	89	IPR001841	-
	Arst10g01774	333	CDD	mRING-HC-C4C4_CesA	41	91	-	-
	Arst10g01774	333	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	256	319	IPR004827	GO:0003700\|GO:0006355
	Arst10g01774	333	Coils	Coil	253	322	-	-
	Arst10g01774	333	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	261	276	IPR004827	GO:0003700\|GO:0006355
	Arst10g01774	333	CDD	bZIP_HY5-like	259	310	-	-
	Arst10g01774	333	MobiDBLite	consensus disorder prediction	96	275	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst10g01774	Arst-Chr10	47819621	47825391	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst10g01774	202	315	bZIP Transcription Factor Family	AT5G11260	73.043	2.79e-49	161

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Arst10g01774		zf-UDP	8.3e-33	CL0229

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst10g01774	K10999		-	aprc:113855639	460.685