Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g01555 ATGGTGGACCATTTCATTGTTTGCATTGATCGTATAATACCTTCCACCTCTTGTTTACCATCACCGCCGCACCATGATCATGTCCCTCCCTTCATTCAACTTGGTCCAGAACAAGAACAAGCCTGCTCCTCCTCCAATTCTTCCTCTTCAAATTACAAGCGTCACGATGATGATGATGATGATGATGTGGTTGTGGAGTGTAGAATATGTCAAGAGGAAGATCAAATCCATTCCATGGAGGCCCCTTGTTCCTGTAATGGCACTCTCAAGTTTGCTCATAGGAAGTGCATCCAAAAATGGTGCAACAAGAAAGGAAATACAATATGTGAAATCTGCAATCAGATATTTTCACCAAACTATTCTCTTCCAATAGTCAGAAGCAACGACATTATAGCAATTGATCTAAGGCAAGAATGGGAGCGTAATACAGATCTTCGTGTTGCTCTAACATCAGCGGAGAACCATTTAATGCAAAGAGAATATGAAGAATATGCTATCACACAAACCAGTAGCATCGCTTGCGTCCGCTGTGCCACTCTCATTTTGCTGATAGTCTTGCTTGTACGCCAAGCCTTAATGGTTACAACGAACTCTGCAACCAGGCGCGATTCATCAAGAATGTTTGATTTTGAGATGTCACTTCTTCAATTTGCCAGCATTCTTTTGCCGTGTTGCGCAATGGCACGTTCCTGGTATCTCATACAGAACAGAAGAAGACAGGGTTAA 726 0.4242 MVDHFIVCIDRIIPSTSCLPSPPHHDHVPPFIQLGPEQEQACSSSNSSSSNYKRHDDDDDDDVVVECRICQEEDQIHSMEAPCSCNGTLKFAHRKCIQKWCNKKGNTICEICNQIFSPNYSLPIVRSNDIIAIDLRQEWERNTDLRVALTSAENHLMQREYEEYAITQTSSIACVRCATLILLIVLLVRQALMVTTNSATRRDSSRMFDFEMSLLQFASILLPCCAMARSWYLIQNRRRQG 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g01555 241 SMART ringv_2 66 113 IPR011016 GO:0008270
Arst10g01555 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 46 123 IPR013083 -
Arst10g01555 241 ProSiteProfiles Zinc finger RING-CH-type profile. 59 119 IPR011016 GO:0008270
Arst10g01555 241 MobiDBLite consensus disorder prediction 40 59 - -
Arst10g01555 241 CDD RING_CH-C4HC3_MARCH 67 113 - -
Arst10g01555 241 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 240 IPR033275 -
Arst10g01555 241 Pfam RING-variant domain 67 112 IPR011016 GO:0008270
Arst10g01555 241 Pfam Protein of unknown function (DUF3675) 118 231 IPR022143 -
Arst10g01555 241 SUPERFAMILY RING/U-box 65 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g01555 Arst-Chr10 29107539 29110569 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g01555 59 162 C3H Transcription Factor Family AT2G37950 26.126 2.34e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g01555 - - ahf:112786832 338.576