Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g01399 ACCGCCACCCCCGCCGAAGTGTCAAAGATCCAATCCTTCCTTACTTCCTCATCCTCCGGCGCACTCTCATGCCTCATCTGCCTCGAACGCATCAAACCCTCAGACCCAACATGGTCCTGCTCCTCGCTCTGCTTCGCCCTCTTCCACCTCCATTGTATCCAATCATGGGCCCGCCAAGCCTCCAATCTCGCTGCCGCACGCGCCGCCACGCGCCTCCCTATCACAGAGCAGCGCGCCTCTGAAACCGCGCTCTGGAACTGCCCCAAATGCAGGGTAGAGTACCCAATCACGCACATTCCAAAAACCTACTTTTGCTTCTGCGGAAAACTCGAGAACCCTCCCAATGATCCATGGGTTTTGCCTCATTCTTGCGGTGAGATTTGTGGGAGGCCATTGAAGCACAACTGTGGTCACCATTGCCTTCTTTTATGCCACCCTGGACCCTGCCCGTCCTGCCCAAAACTCGTGAAAGTTAGTTGCTTTTGTACCAAAATTGAAGATGTGAGGAGGTGCGGGTTCAAGGAGTTCTCGTGTGGGAAAGTTTGTGGGAAGCTTCTGGATTGTGGGGTTCATGGTTGTGCTGAGATTTGTCATGAGGGTCAATGCCCTCCCTGCCGGGCACGCAGTGTGTACCAGTGCCGGTGTGGTAAGAAGAAGGAAGAGAGGGAGTGCTGTAACCGTGTTTTCGGGTGTGGCGAGCCTTGTGAGAAGAGGCTCGGATGTGGGAGGCATGTGTGTGAGAGAGGTTGCCATGTTGGGGAGTGTGGAGACTGCCCTTTGCAAGGGAAGAGGGCATGTCCTTGTGGGAAGAGAGTGTATGAAGGGATGCCTTGTGATGTTACTGTGCCCTTATGTGGGGCTACTTGTGATAAGATGCTTAGTTGTAGGTACCATAGGTGCCCCGAGAGGTGCCACCGTGGTGCATGTGTTGAGACTTGTAGGACTGTTGTGAAGAAGTCTTGTCGATGCGGCAGCCTCAGGAAAGATGTTCCTTGCTATCAAGATTTGTGGTGTGAAAGGAAGTGCCAGAGGATGCGGGACTGTGGCCGGCATGCTTGTAAACGCAAGTGCTGTGATGGGGATTGCCCTCCATGCTCAGAGGTCTGTGACAGGCGGCTTAGATGTAAAAACCATAAATGCCCTTCTCCATGCCATAGGGGTGCCTGTGCTCCTTGCCCAATAATGGTCACCATTTCATGTGCATGTGGGGAAACACATTTTGAGGTTCCTTGCGGTACTGAAATGGAACAAAAACCACCCAAGTGTCCTAAACCATGCCCTATTGCTCCTTTATGCCATCATGCACCAAAGCTCAAGCCACACAAATGCCATTATGGAGCCTGTCCTCCTTGTCGGCTCCCTTGTGCAGAAGAGTACTCTTGTGGCCATGCTTGCAAATTAAGGTGTCATGATGCTAAACCTCCGCCTAATCGGGAGTTCACTCTCAAACCAAAGAAAAAGAAAATTATACAACAAAGTGAATGTACACCTGGTACTCCATGCCCTCCTTGCCCTGAACTAGTGTGGAGACCATGTGTCGGGCAACACATTGGAACGGAGCGAATGATGGTCTGCTCTGATAAATCACAGTTTGCCTGTGAAAACTTATGTGGAAATCCTCTACCGTGCGGTAATCATTATTGTACTAAAACCTGCCATGCCTTGGAGAATCCGGCCTCCACGAACCGGCTACAGAAAAGTGAGCCTTGTGAAGATTGTTCTCTTCCTTGTGATAAGGAAAGAGAACCTAAATGTCAGCATTGTTGCCCTCGTCGATGCCATCCTGGAGACTGTCCTCCATGCAAAGCGCTGATCAAGCGGTCTTGTCATTGTGGCTCAATGGTCCATGTGTTTGAGTGCATATATTACAACACCTTGTCAGCTAAGGATCAAGAGAAAGTCCGTTCATGTGGTGGGCTGTGTCATAGGAAGTTAGCAAATTGTACCCATCTATGCCCCGAGACGTGCCATCCTGGTGAATGCCCAAATCCTGAGAAATGCAGTAAAAAGGTCATCGTTCGTTGCAAATGCCAAACACTGAAAAGGGAGTGGCCATGTCACGATGTTCAAGCAGCATATCACAGTGCTGGTTCCCACCCAAAGGATATTACCAAAAATCAATTTGGAATTGGCCTTATTCCTTGCAATTCTGATTGCAAGAGTAAAATGCAGGTTGTTGAGTCGGAATTACATCTACGTAAATCTCAAGTTACAGAGGTAAAAGAGACAGATAATGAAAAACTGGCTCCGAAGCGACGAAAAAGGCAGAAACGAGTCCAAGAATCTAAGGAAGCAACAAAAATACAGAAAATTATTTCTACAACAAAGAAGCTCCTTCTGTACCTTTTTATTTTGATCGTACTTGTTACTGCTACATATTATGGATACAAGGGACTTCTGTGGCTCAATGATTGGATGAATGAAGTTGATGAACGAAGACAAAGACATCCTAGGATCAGATGA 2463 0.4872 DLSASIXKPYFEFTGRHSSSSTTATPAEVSKIQSFLTSSSSGALSCLICLERIKPSDPTWSCSSLCFALFHLHCIQSWARQASNLAAARAATRLPITEQRASETALWNCPKCRVEYPITHIPKTYFCFCGKLENPPNDPWVLPHSCGEICGRPLKHNCGHHCLLLCHPGPCPSCPKLVKVSCFCTKIEDVRRCGFKEFSCGKVCGKLLDCGVHGCAEICHEGQCPPCRARSVYQCRCGKKKEERECCNRVFGCGEPCEKRLGCGRHVCERGCHVGECGDCPLQGKRACPCGKRVYEGMPCDVTVPLCGATCDKMLSCRYHRCPERCHRGACVETCRTVVKKSCRCGSLRKDVPCYQDLWCERKCQRMRDCGRHACKRKCCDGDCPPCSEVCDRRLRCKNHKCPSPCHRGACAPCPIMVTISCACGETHFEVPCGTEMEQKPPKCPKPCPIAPLCHHAPKLKPHKCHYGACPPCRLPCAEEYSCGHACKLRCHDAKPPPNREFTLKPKKKKIIQQSECTPGTPCPPCPELVWRPCVGQHIGTERMMVCSDKSQFACENLCGNPLPCGNHYCTKTCHALENPASTNRLQKSEPCEDCSLPCDKEREPKCQHCCPRRCHPGDCPPCKALIKRSCHCGSMVHVFECIYYNTLSAKDQEKVRSCGGLCHRKLANCTHLCPETCHPGECPNPEKCSKKVIVRCKCQTLKREWPCHDVQAAYHSAGSHPKDITKNQFGIGLIPCNSDCKSKMQVVESELHLRKSQVTEVKETDNEKLAPKRRKRQKRVQESKEATKIQKIISTTKKLLLYLFILIVLVTATYYGYKGLLWLNDWMNEVDERRQRHPRIR 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g01399 842 CDD NF-X1-zinc-finger 360 408 - -
Arst10g01399 842 CDD NF-X1-zinc-finger 200 246 - -
Arst10g01399 842 SUPERFAMILY RING/U-box 44 118 - -
Arst10g01399 842 ProSitePatterns Zinc finger PHD-type signature. 46 112 IPR019786 -
Arst10g01399 842 CDD NF-X1-zinc-finger 253 300 - -
Arst10g01399 842 Pfam NF-X1 type zinc finger 608 624 IPR000967 GO:0005634|GO:0008270
Arst10g01399 842 Pfam NF-X1 type zinc finger 319 336 IPR000967 GO:0005634|GO:0008270
Arst10g01399 842 Pfam NF-X1 type zinc finger 565 575 IPR000967 GO:0005634|GO:0008270
Arst10g01399 842 Pfam NF-X1 type zinc finger 263 281 IPR000967 GO:0005634|GO:0008270
Arst10g01399 842 Pfam NF-X1 type zinc finger 370 388 IPR000967 GO:0005634|GO:0008270
Arst10g01399 842 Pfam NF-X1 type zinc finger 210 228 IPR000967 GO:0005634|GO:0008270
Arst10g01399 842 Pfam NF-X1 type zinc finger 397 415 IPR000967 GO:0005634|GO:0008270
Arst10g01399 842 Pfam NF-X1 type zinc finger 483 493 IPR000967 GO:0005634|GO:0008270
Arst10g01399 842 Pfam NF-X1 type zinc finger 158 175 IPR000967 GO:0005634|GO:0008270
Arst10g01399 842 Pfam NF-X1 type zinc finger 464 474 IPR000967 GO:0005634|GO:0008270
Arst10g01399 842 Pfam NF-X1 type zinc finger 671 689 IPR000967 GO:0005634|GO:0008270
Arst10g01399 842 CDD NF-X1-zinc-finger 595 636 - -
Arst10g01399 842 CDD NF-X1-zinc-finger 146 194 - -
Arst10g01399 842 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 20 493 IPR034078 GO:0003700
Arst10g01399 842 CDD NF-X1-zinc-finger 387 435 - -
Arst10g01399 842 CDD NF-X1-zinc-finger 307 356 - -
Arst10g01399 842 SMART znfxneu3 607 625 IPR000967 GO:0005634|GO:0008270
Arst10g01399 842 SMART znfxneu3 263 282 IPR000967 GO:0005634|GO:0008270
Arst10g01399 842 SMART znfxneu3 210 229 IPR000967 GO:0005634|GO:0008270
Arst10g01399 842 SMART znfxneu3 565 597 IPR000967 GO:0005634|GO:0008270
Arst10g01399 842 SMART znfxneu3 454 475 IPR000967 GO:0005634|GO:0008270
Arst10g01399 842 SMART znfxneu3 158 176 IPR000967 GO:0005634|GO:0008270
Arst10g01399 842 SMART znfxneu3 317 337 IPR000967 GO:0005634|GO:0008270
Arst10g01399 842 SMART znfxneu3 397 416 IPR000967 GO:0005634|GO:0008270
Arst10g01399 842 SMART znfxneu3 670 691 IPR000967 GO:0005634|GO:0008270
Arst10g01399 842 SMART znfxneu3 483 528 IPR000967 GO:0005634|GO:0008270
Arst10g01399 842 SMART znfxneu3 370 389 IPR000967 GO:0005634|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g01399 Arst-Chr10 22929788 22937023 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Arst10g01399 zf-NF-X1 1.5e+02 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g01399 K15683 - gmx:100799540 1458.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst10g01399 10 22929788 22937023 Arst10g01399 10 22929788 22937023 ECH