Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g01372 ATGGAGAATTATGATCATTGTTCTTTATTTCTAGACCCTTCACAAACACTGCCTCATGTCTCAGATTGTAATTCTCTTCATCATCAATTTGGTGGTGAGTTTCATTCATGGCCGGCACCGGTCGAAATGGTGGCCGGAGACAGAGCTGCTAGTGCTTCCAAGAGCCATAGTCAGGCCGAGAAGCGGCGCAGGGACCGGATCAATGCACAGCTTACAAGTCTAAGGAAACTAATTCCAAAATCTGATAAGATGGACAAGGCAGCTTTACTAGGAAGTGTGATAGAGCAAGTGAAGGATCTAAAGAGAAAAGCAATTGAAGTTAGCAAAGCCATAACCGTTCCAACTGAATCCGACGAAATAACAATCGAATATGATCCCAGTGCGCGTGACGAGAGCCTAAAGATGAAGAACAAAGTTGTGATCAAGGCATCTGTTTGCTGCGACGATCGGCCGGAGCTGTTCTCGGAACTAATCCAAGTCCTAAAAGGATTAAGGCTGACGGCAGTTAGAGCTGACATAGCAAGTGTTGGTGGAAGAATGAAAGGCACATTTTTGCTTTGTTCTAAGGATAATGAAAAGGTTGTTTGCCTTGGTACTCTCAAGCATTCACTTAAATCAGTTGTGACAAAAATTGCTTCATCTTCCATTGCAACAAATTGGCCTACTAGAAGTAAGAGGCAAAAGTTCTTCTTACCTTCTCATTTTATATAG 711 0.4276 MENYDHCSLFLDPSQTLPHVSDCNSLHHQFGGEFHSWPAPVEMVAGDRAASASKSHSQAEKRRRDRINAQLTSLRKLIPKSDKMDKAALLGSVIEQVKDLKRKAIEVSKAITVPTESDEITIEYDPSARDESLKMKNKVVIKASVCCDDRPELFSELIQVLKGLRLTAVRADIASVGGRMKGTFLLCSKDNEKVVCLGTLKHSLKSVVTKIASSSIATNWPTRSKRQKFFLPSHFI 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g01372 236 PANTHER TRANSCRIPTION FACTOR BHLH30 41 231 IPR045847 GO:0003700|GO:0006355
Arst10g01372 236 SMART finulus 57 106 IPR011598 GO:0046983
Arst10g01372 236 Gene3D - 46 109 IPR036638 GO:0046983
Arst10g01372 236 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 52 103 IPR036638 GO:0046983
Arst10g01372 236 CDD bHLH_AtAIG1_like 47 122 - -
Arst10g01372 236 Pfam Helix-loop-helix DNA-binding domain 54 100 IPR011598 GO:0046983
Arst10g01372 236 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 51 100 IPR011598 GO:0046983
Arst10g01372 236 CDD ACT_UUR-ACR-like 144 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g01372 Arst-Chr10 21032634 21033670 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g01372 30 235 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 48.357 3.31e-53 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Arst10g01372 HLH 5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g01372 - - adu:107469423 468.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst10g01372 10 21032634 21033670 Arst10g01372 10 21032634 21033670 ECH
Arst10g01372 10 21032634 21033670 Arst7g01103 7 9206742 9208529 PCT