Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g01354 ATGGATGGTTCCGCTAAGTCTCTGCTAGTTTCATTGGTTAACATTGCTAATGAAGTTAGTTCAATGGAGAAGTCTCACTTTGTTCATGCAAGGAATGTTTCATCCATGATATGGAGGATCAAGCTTCTCTCTTCTATGCTTGAAGAGATTCAATTAACATGCTGTCCAATTCCTCCATCTTCCATAATGTCTTTCAATGAGATCTTGTCTTTGATTGTGAAATCAAAGCATATGATTCAAGAATGCAAAGATGGCAGTTATCTTTGGAGTCTAATACAGTTGGAGTTCATATCCAACCAATTTTACTTGCTGGCAAAGGATATGGGAAATTCCCTTGACACACTTCCTCTGAGTTCGCTTAGCATCACAAGAGATACACAAGAACAAGTGGAGCTTCTCCAGAAACAAGCAAAAATGGTTAAGTTGTTCATTGATCCTCGCGATCTTCAACAAAGAGACCGGCTTCTACATGTGATGGCCAACAACAGTTTACAAAACAAGGACTTTGTTGATGCTAGAAAAGTGGAGGAAATATTAAGCAACATTGGTTTGAAAACTGCATCGGATTATGATATGGAAATATCGAAATTAGAGGCTGAAGCTCGGAATCAGGCTAGCACCGGAGGACTAAAGGAAGCGTCTGATATCAAGAATCTGTTATTCCTGGTTTCGTATTCCAAATCAATGATATTCAAGGATGTAGAGAATGAAAGAAATGAAGGAGAGTGCCAGCCGCTGCCTGAATTTCAACATATCAAAATTCATGATTATTGTTCAGCAAGTTCCAAGTCCATAACACTAAATATTCGCGACGAATTTCTTTGCCCGATTTCGCTTGAGCTAATGAGGGATCCTGTGATTGTATCTTCCGGCCACAGCTATGATCGAGTTTCGATAGCACGGTGGATAAACTCTGGGCATCACACTTGCCCCAAAAGTGGACAAAGGTTAATTCACACTGCTCTAGTACCAAACTATGCATTGAAGAGTCTTATCCAGCAATGGTGCTATGAAAACAAGCTCCCAGTGAATGACCCTACTATGTCTGTTTTGAAGGTAAATAGCAGCAAGAAGAACTTCAATGCGAATTCTTTAGATGCGATCAAAATGACAGCAGAGTTTTTAGTTGGAAAATTGGCAACTGGCTCGGCCGACACCCAAAGGAAAGCCGCTTATAAACTCCGGTTACTCGCAAAATGCGGTATGGACAGTCGAAAAATTATAGCCGAGGCCGGGGCTATTCCATTTCTAGTTACACTACTACTTTCCAATGATCCCAGAATCCAGGAACAAGCGGTGACGGCTTTGTTAAACCTCTCCATCTTTGACAACAACAAGATTTTGATAATGGCAGCCGGCAAAGCAATCGAAAACATAATAGAAGTACTTGAATCTGGGAAGACAATGGAGGCAAGACAAAATGCGGCAGCAGCAATATTCAGCTTGACTATGATAGATTACAGCAAAGTAACAATTGGAGGTCATCCAAGAGCCACAAAGGCATTAGTTAACCTCTTGAAAGAAGGCACAGCTGTAGGTAAAAGAGATGCTGCTAGTGCGCTTTTCAACCTGGCAGTTTACCAAAATAACAAGGCGAGAATTGTGAGTGCAGGGGCAGTTTCTTTGCTGATTGAGTTGCTGATGGATGATAAGGCCGGTATCACTGATGATGCATTGGCTGTGCTTGCTTCTCTTGTTGGTTGCTCTCAAGGGCTACAAGAGATAAGGAACAGCAGAGCATTGGTTTCTATCCTTATTGAGCTTCTGAGGTATGGATCAGCCACAGGGAAGGAAAACTCAATAACACTTCTTCTCGGGTTGTGCAAAGAAGAAGGCGAGCTCGTGGCAAGGCGTCTCTTAGTGAATCCCAGCAGCATTCCTTCTCTTCAAAGTTTGGCTGCTCATGGTTCGTTGAGGGCACGTCGAAAGGCTGATGCATTGCTTCGCTTGCTAAATAGATGCTGCTCACAACCTCATCATTCTCTTTGA 1989 0.4223 MDGSAKSLLVSLVNIANEVSSMEKSHFVHARNVSSMIWRIKLLSSMLEEIQLTCCPIPPSSIMSFNEILSLIVKSKHMIQECKDGSYLWSLIQLEFISNQFYLLAKDMGNSLDTLPLSSLSITRDTQEQVELLQKQAKMVKLFIDPRDLQQRDRLLHVMANNSLQNKDFVDARKVEEILSNIGLKTASDYDMEISKLEAEARNQASTGGLKEASDIKNLLFLVSYSKSMIFKDVENERNEGECQPLPEFQHIKIHDYCSASSKSITLNIRDEFLCPISLELMRDPVIVSSGHSYDRVSIARWINSGHHTCPKSGQRLIHTALVPNYALKSLIQQWCYENKLPVNDPTMSVLKVNSSKKNFNANSLDAIKMTAEFLVGKLATGSADTQRKAAYKLRLLAKCGMDSRKIIAEAGAIPFLVTLLLSNDPRIQEQAVTALLNLSIFDNNKILIMAAGKAIENIIEVLESGKTMEARQNAAAAIFSLTMIDYSKVTIGGHPRATKALVNLLKEGTAVGKRDAASALFNLAVYQNNKARIVSAGAVSLLIELLMDDKAGITDDALAVLASLVGCSQGLQEIRNSRALVSILIELLRYGSATGKENSITLLLGLCKEEGELVARRLLVNPSSIPSLQSLAAHGSLRARRKADALLRLLNRCCSQPHHSL 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g01354 662 Gene3D - 357 492 IPR011989 -
Arst10g01354 662 FunFam RING-type E3 ubiquitin transferase 268 342 - -
Arst10g01354 662 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 412 454 IPR000225 GO:0005515
Arst10g01354 662 FunFam RING-type E3 ubiquitin transferase 468 655 - -
Arst10g01354 662 ProSiteProfiles U-box domain profile. 268 342 IPR003613 GO:0004842|GO:0016567
Arst10g01354 662 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 268 343 IPR013083 -
Arst10g01354 662 SMART Ubox_2 272 335 IPR003613 GO:0004842|GO:0016567
Arst10g01354 662 SUPERFAMILY ARM repeat 373 651 IPR016024 -
Arst10g01354 662 Pfam U-box domain 270 340 IPR003613 GO:0004842|GO:0016567
Arst10g01354 662 Pfam Armadillo/beta-catenin-like repeat 405 440 IPR000225 GO:0005515
Arst10g01354 662 PANTHER U BOX DOMAIN-CONTAINING 33 656 - -
Arst10g01354 662 SMART arm_5 486 526 IPR000225 GO:0005515
Arst10g01354 662 SMART arm_5 401 441 IPR000225 GO:0005515
Arst10g01354 662 SMART arm_5 568 609 IPR000225 GO:0005515
Arst10g01354 662 SMART arm_5 527 567 IPR000225 GO:0005515
Arst10g01354 662 CDD RING-Ubox_PUB 271 322 IPR045210 -
Arst10g01354 662 Gene3D - 494 650 IPR011989 -
Arst10g01354 662 SUPERFAMILY RING/U-box 257 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g01354 Arst-Chr10 20199219 20201225 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g01354 1 657 U-box Gene Family AT3G46510 38.138 1.51e-118 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g01354 - - gmx:100793498 867.84