Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g01339 ATGGAAGCATCCAATCCATGCTTATTATCCATAAATCCCTTAGCAAAATCTTCTTTTTCAACAGCTTTTGAAGGATTTTTGTTTGGATCATGGCAACCAGTGGAGCATATGAAAATAGAGTCAGGAACTATGATCATATATTTTAAGGAAAACCAACGTTTGGTTTTGAAGAGAGGCCCCACTTTAGACATTCGGATAAAGTCAAGAAAAGCCACTTCATCAGATTGTTCTTCTTTTCTACGGCCTGGAGTTGATATATGTGTTCTTTCAACCCCACAATGCACTGCTAATAATAATGATCCTGTGTGGATTGATGGTAGAATAAATTCCATAAAGAGAAACCCCCATGATTCTGATTGTTCATGTCAATATTATGTCAACTTCTATCTTAACCAAGGTTCATTTGGTACACAAAGAACACTTAGCAAGGAAGTTAAAGTAATTGCATTGAATCAAATTTCAATCCTCCAGAAGATTGACCATAATAGTTTCTCTAAAGATAACTCTTCTAGGTGGGATTCATCAATGGACTGCTCCTCAGTACCCCAAAGTAAATTACTCTTGGGGAAATTCTTATCGGATATTTCATGGCTAGTTATTGCATCTTTTTTAAAGAAGGCTAAATTTGATGTAAGATCTGTGGATAACAAGATTGTGTATCAAGTTTTGGGAGGTAGTAATGCTAATGATTCTTACATAGATGTTGTGAATTTCAAAGTAGATGATGATGGCATTGTGCAATCCATGGTCTCTCAAATTGATACACATGATGCTATTAAAAGAATTGGTCATAAAAGATGTTATGATTATTCCCCTGAAGATGAGAAAGCAGATCCATCCTGTAATGTTGAGGGATTAAGGCGTTCGAAGCGACGGCATGTACAACCGGACCGGTACCTTGGTTGCGAGGTTCCTGTGATGGATGTTAGTACTCTTAGAACTTGGCCTCCCAAGATGAGTGTATCGAAAGACGAAGACAAAGAAGAAGAGCCTGTTCCATTAGCATGGGAGCCTTGCTTCCAAGAAAAGTGTAATAAACAAGATGTTAACAGTGGCAAGAAAATTGTAACGTACCAAAGAAGGAAGAAAAGAATGGAAGGGAAGTTAGGTGATGCAGATCAAGATGGAATTCAACCTCCAATTCTTGTTCTTCCTCCTCCCAAGAAAGATGAACCAATTCCACTTCCCCAGAGCCGTTATAATCTCAGGAACAAGCAAAACACGCAAGAAACCGGGAACGAAGAAAAAGTGGAAGAACTTTCTTCAAGAATCTATAGCGGTTATGGCGCCGCAAAGTTACACAAGAAGAAATCAGTTGATCTAGATGATATAGACATCGAACTTGGATGGGAAGGTTTAAGTTCGAAAAGAAGAGTTCAAGAGAAAAGAAACCACCATTCAAGTTCAACAACATATTCAAAAAGTAGTAGGAATCTTGATGATGAAGAAAGATCTTACAAAGACAGAACCTTAAACGCAGTTTCATACAAGGAAGTCATAGATTCATATCTGAGGCAAATTGAAGAGGCTTCTAATATTGAAAAAGAGCAACCAAGTATAAGGGAGCAGTGGATGGCTACAACAAGAGAATGTGAACAAAAGAATGAGATGGCAAAATCTCAAGTGGAGAAAGAAGAAATTTCTGAAACGGCTATGTTATGGAGAGAAATGGAAATGTCAATGGCATCAAGTCATCTTGTTGAAGAAACAAAGGATTCAAGTTCAGATGCAGTTCTTGCTGAAACTACAGGAAACTGCAACAAAGTTTGCCAACATGATTATAGATCGGATGATGAAATTGGAATTTACTGCATTAGATGCGGCGTTGTTAGGGTCGACATCAAAGACGTCGCAACAGAATTTTTGCCACAGAAAACAAGGCACAGGCAAGAGGAGAATCAGCGGAGTGATTCAGAGAAGCTGGAGGCTGAGGAAGACTCCAGCGACTCCAAGTTTTTCTCAACCGTTGATGCTTCTAGAGATGAACCTATGCATGAAGAAAATGGCAATGTGTGGGAACTAGTTCCAGATTTGAAAGCAAAAATGCATGTCCACCAAAGAAAAGCATTTGAGTTTCTTTGGCGAAACATTGCAGGGTCAATGGAACCATTACAAATGGAGTCACAATCCAAAAGCATTGGTGGTTGTGTGATATCTCATTCTCCGGGAGCCGGAAAAACCTTCCTCATAATCGCGTTTCTCGTCAGTTATCTGAAGCTTTTCCCAGGGAAAAGGCCATTGATTCTTGCTCCAAAAACTACACTCTACACATGGTACAAGGAGTTCCTCAAATGGGAGATTTCTTTACCGATTTATATCATCCATGGCCGCTCGTCGCAGAAGCAGTTCAAGGAGAATACCGTGTCCATTCCTGGCATTCCAAAGCCAACGAATGATGTAAAGCATGTTCTTGACTGTCTAACAAAGATTCACAAATGGCATGAGCATCCCAGTGTCCTAATCATGAGCTATACTTCGTTTCTTTCGCATATGCGCGAAGATTCCAGATTCTCTCACGGAAAGTATATGGCAAAAGTCTTGAGAGAAAGCCCTGGGATCTTGGTTCTCGACGAAGGGCACAATCCTCGCAGCACGAAATCGAGGTTGAGGAAAGTTTTGATGAAGGTAAATACAGAGCTCAGAGTTTTGCTCTCTGGAACCTTGTTTCAGAACAATTTCTGCGAGTTTTTCAACACGTTGTGCTTGGCCAGGCCTAAGTTTGTTCACGAAGCTTTATCAGAGTTGGATGGTAAATACCGGACGAATCAAAAGATTGCCGAGAAAGCAAAACATTTGCTCGAGTCACGGGCGAGGAAATTCTTCCTGGACCAGATTGCCAAGAGAATAAACTCAAGCGATGACGAAGACACGGAGCAGGGTCTGAATTTGTTGAAGAAACTAACAAATGAATTCATTGATGTGTATGATGTCGGCAACTCTAATATTACTATGCCTTGTTTACAGATCTATACATTGGTGATGAACACAACTGATATACAGTTCAAGATTCTGTTTGAACTGCACCAGAAAATGGGTGAGTGCCATGGCTACCCTCTGGAGTTAGAGCTTCTTATAACACTTGGATCAATCCATCCGTGGCTGGTGAAAACGGTGGAGTGCGTAGCTAAGTTCTTGAGTGTGGAGCGATTGAGGGAGTTAGATGAAGTCAGGAATGATTTAAAGAAAGGCTCTAAGGTGAGATTTGTTCTTAGCCTCATAAGCCGCGTTTTCGCGAAGGAGAAGATCTTGATCTTCTGTCACAACATTGCACCAGTGAAGTTGCTTGTGGAATTGTTTGAGAGAGTTTTTAGTTGGAGAAAAGACAGAGAGATATTGGTACTCAACGGGGAACTTGAATTGTTCGAACGCGGGAAAGTCATCGATAAGTTCGAGGATCCTCATGGTGTTTCGAGGGTGCTTCTTGCCTCAATCACGGCCTGCAGCGAAGGGATTAGTCTAACTGCGGCTTCTAGAGTGATCATGTTGGATTCGGAATGGAATCCTTCCAAGACGAAGCAAGCGATTGCGAGGGCTTTCAGACCGGGGCAGCAGAAAACGGTTTATGTGTATCAGTTACTAACTTCAGATTCATTGGAGGTAGATAAGCATAGGAGAAACAAATGGAAAGAGCGGGTTTCTTGCATGATATTCAATGAGGAATCTGCGGAGGCTCCTTCGCAGTGGCTAGCCGAGAATATTGAGGATGATGTGCTTAGAGATATGGTTGAGGAGGACAAGTCTAAATCATTCCATATGATCATAAAGAATGACAAGTATTCAGCAACTATTGATCGGTAA 3798 0.4092 MEASNPCLLSINPLAKSSFSTAFEGFLFGSWQPVEHMKIESGTMIIYFKENQRLVLKRGPTLDIRIKSRKATSSDCSSFLRPGVDICVLSTPQCTANNNDPVWIDGRINSIKRNPHDSDCSCQYYVNFYLNQGSFGTQRTLSKEVKVIALNQISILQKIDHNSFSKDNSSRWDSSMDCSSVPQSKLLLGKFLSDISWLVIASFLKKAKFDVRSVDNKIVYQVLGGSNANDSYIDVVNFKVDDDGIVQSMVSQIDTHDAIKRIGHKRCYDYSPEDEKADPSCNVEGLRRSKRRHVQPDRYLGCEVPVMDVSTLRTWPPKMSVSKDEDKEEEPVPLAWEPCFQEKCNKQDVNSGKKIVTYQRRKKRMEGKLGDADQDGIQPPILVLPPPKKDEPIPLPQSRYNLRNKQNTQETGNEEKVEELSSRIYSGYGAAKLHKKKSVDLDDIDIELGWEGLSSKRRVQEKRNHHSSSTTYSKSSRNLDDEERSYKDRTLNAVSYKEVIDSYLRQIEEASNIEKEQPSIREQWMATTRECEQKNEMAKSQVEKEEISETAMLWREMEMSMASSHLVEETKDSSSDAVLAETTGNCNKVCQHDYRSDDEIGIYCIRCGVVRVDIKDVATEFLPQKTRHRQEENQRSDSEKLEAEEDSSDSKFFSTVDASRDEPMHEENGNVWELVPDLKAKMHVHQRKAFEFLWRNIAGSMEPLQMESQSKSIGGCVISHSPGAGKTFLIIAFLVSYLKLFPGKRPLILAPKTTLYTWYKEFLKWEISLPIYIIHGRSSQKQFKENTVSIPGIPKPTNDVKHVLDCLTKIHKWHEHPSVLIMSYTSFLSHMREDSRFSHGKYMAKVLRESPGILVLDEGHNPRSTKSRLRKVLMKVNTELRVLLSGTLFQNNFCEFFNTLCLARPKFVHEALSELDGKYRTNQKIAEKAKHLLESRARKFFLDQIAKRINSSDDEDTEQGLNLLKKLTNEFIDVYDVGNSNITMPCLQIYTLVMNTTDIQFKILFELHQKMGECHGYPLELELLITLGSIHPWLVKTVECVAKFLSVERLRELDEVRNDLKKGSKVRFVLSLISRVFAKEKILIFCHNIAPVKLLVELFERVFSWRKDREILVLNGELELFERGKVIDKFEDPHGVSRVLLASITACSEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKTVYVYQLLTSDSLEVDKHRRNKWKERVSCMIFNEESAEAPSQWLAENIEDDVLRDMVEEDKSKSFHMIIKNDKYSATIDR 1265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g01339 1265 CDD SF2_C_SNF 1064 1193 - -
Arst10g01339 1265 SMART ultradead3 678 920 IPR014001 -
Arst10g01339 1265 Pfam Helicase conserved C-terminal domain 1065 1181 IPR001650 -
Arst10g01339 1265 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 668 908 IPR027417 -
Arst10g01339 1265 Gene3D - 1019 1264 IPR027417 -
Arst10g01339 1265 MobiDBLite consensus disorder prediction 625 652 - -
Arst10g01339 1265 MobiDBLite consensus disorder prediction 366 418 - -
Arst10g01339 1265 Pfam SNF2-related domain 682 935 IPR000330 GO:0005524|GO:0140658
Arst10g01339 1265 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 707 906 IPR014001 -
Arst10g01339 1265 SMART helicmild6 1097 1182 IPR001650 -
Arst10g01339 1265 MobiDBLite consensus disorder prediction 457 484 - -
Arst10g01339 1265 Gene3D - 653 949 IPR038718 -
Arst10g01339 1265 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1068 1223 IPR001650 -
Arst10g01339 1265 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 60 1260 IPR044567 GO:0080188
Arst10g01339 1265 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 851 1221 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g01339 Arst-Chr10 19561652 19567239 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g01339 1053 1220 RAD5 or RAD16-like Gene Family AT5G43530 31.395 4.14e-12 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Arst10g01339 SNF2_N 5.5e-19 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g01339 K10875 - gmx:100811703 1363.98