Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g01079 ATGAAGAGAACTGGAAGCTCATCAGATTCTTTAGGACCTCTCATGACAATTTGTCCATCATCAACAGAGGAGCAGAGTCCGAGGAGCAACCACGTGTACGGGCATGATCCATTGTTCCAGTCGATGGTGCTTGATGGTCTAGACGAAGAAGGGTGCACGGTAGAGGAATCTGGGCACCACTCTGAGAAGAAGCGAAGACTTAGCGTGGAACAAGTGAAAGCGTTGGAGAAGAACTTCGAGGTTGAGAACAAGCTTGAACCAGAGAGGAAGGTGAAGTTAGCACAAGAACTTGGGTTGCAGCCTAGACAGGTGGCGGTTTGGTTCCAGAACCGCCGCGCCAGGTGGAAGACTAAACAGCTTGAGAGAGATTATGGCGTTCTTAAAAATAATTATGATGCTCTTAAAGTTAATCATGATGCACTAAAACAGGACAACGATGCGTTGCACAAGCAGGTACACACTACACACTATCATAAATTATTGGTGATGAATGAAGAACACAACACTACTCCTGATGAAACCTCAATTCTTGGATCAGGATCCAACGTTAACGATCATCACTTGTACCATGACAATTGCTTCAACGACAACAGCGACCACGGTGTTGTTGCTCTTGGTGCAACAACAACACCGCCGTCGCCATCACCGTCGTCGCCGCCACTCTTCCCTTCAGACTTCAACAAAGACGGTTCTTCCGATAGCGATTCAAGTGCGATCCTAAACGAAGACACCAAAGACGCAATTTCTTCGTCTGGGGTGCTTCAAAGTAACCACCACTTCCTGATGTTTTCAGAGTCTCCTGCATTGAAATTCAACTGTTCCATGTTGGCCTCTTCGTCTTCCATGAATTGCTTCCAGTTCCAGAAACCGCACCAGACTATGCAATACGTGAAGATGGAAGAGCACAATTTCATCGGTGCCGCTGATGAGGCATGCAATTTGATCTTCTCCGATGAACAAGCACCCACCCTTCATTGGTACTCTTCAGATCAGTGGGGTTAA 1002 0.4681 MKRTGSSSDSLGPLMTICPSSTEEQSPRSNHVYGHDPLFQSMVLDGLDEEGCTVEESGHHSEKKRRLSVEQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKNNYDALKVNHDALKQDNDALHKQVHTTHYHKLLVMNEEHNTTPDETSILGSGSNVNDHHLYHDNCFNDNSDHGVVALGATTTPPSPSPSSPPLFPSDFNKDGSSDSDSSAILNEDTKDAISSSGVLQSNHHFLMFSESPALKFNCSMLASSSSMNCFQFQKPHQTMQYVKMEEHNFIGAADEACNLIFSDEQAPTLHWYSSDQWG 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g01079 333 ProSiteProfiles 'Homeobox' domain profile. 58 118 IPR001356 GO:0003677
Arst10g01079 333 MobiDBLite consensus disorder prediction 222 238 - -
Arst10g01079 333 Gene3D - 57 125 - -
Arst10g01079 333 Pfam Homeodomain 63 116 IPR001356 GO:0003677
Arst10g01079 333 MobiDBLite consensus disorder prediction 1 29 - -
Arst10g01079 333 SUPERFAMILY Homeodomain-like 53 120 IPR009057 -
Arst10g01079 333 CDD homeodomain 63 119 IPR001356 GO:0003677
Arst10g01079 333 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 45 249 IPR045224 GO:0003700
Arst10g01079 333 SMART HOX_1 61 122 IPR001356 GO:0003677
Arst10g01079 333 PRINTS Lambda-repressor HTH signature 89 98 IPR000047 GO:0003677
Arst10g01079 333 PRINTS Lambda-repressor HTH signature 98 114 IPR000047 GO:0003677
Arst10g01079 333 FunFam Homeobox-leucine zipper protein HAT5 56 120 - -
Arst10g01079 333 Pfam Homeobox associated leucine zipper 118 153 IPR003106 GO:0006355|GO:0043565
Arst10g01079 333 Coils Coil 117 151 - -
Arst10g01079 333 ProSitePatterns 'Homeobox' domain signature. 93 116 IPR017970 GO:0000981|GO:0006355
Arst10g01079 333 MobiDBLite consensus disorder prediction 1 28 - -
Arst10g01079 333 MobiDBLite consensus disorder prediction 204 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g01079 Arst-Chr10 11413035 11416300 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g01079 1 332 Homeobox Transcription Factor Family AT4G40060 44.759 1.95e-65 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Arst10g01079 Homeodomain 2.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g01079 K09338 - zju:125423848 338.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst3g05460 3 129214527 129216745 Arst10g01079 10 11413035 11416300 PCT