Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g01074 ATGCATCACCCTGACTACAACCATCGTCAGCCACCGCCATTTCGCCGCCACTTCTCGAAGCCAATCGATTTTCACCCTAACCACTACCGTCCGCCGGGACCTCCAAATCCCATCGCCTTCCAGGCTCCCAATTTTGTTCTCCACCTCCGCCGCGGCCGCCGCCATCTCCGCCGCGACCTCATAAACTCGATCATCTCCCAGTGCCCTTCCAAACCACAATCTTTCTCAATTTTGCCCTATTCCTCCGACCATAACTACCACCGCCGTTCCTCGTCCACCGTCGATGCGGCGATCCTCAATTTCCTTCAGTGGGTGGACACGCTCAACGCCGTTGCGTATCTCTGGGAAACGCGACTCGACGGCATGCACGACCTAACTCCGGAGCTGAAGTCCAATGTGATGGTCCCTTCCGACGAGGACGAACTCTATTCTCGGCTACGTGCTGTCTTCGCGCGTCACGTGAAGAGTCTCATGCAAGAAGCGAAGGAATTGAAGCGTTGGGAAGGGGAGAGTGAGCGATTAACGAAGGAGATCGCGGGTATGGAGCCACAGAAGAAGAACAAACATTATCAAGTTGGGGAATTTTTTCAGATGAATGAGAATAAGAAAAGGTTTGAGGAAGAGAAAAATCTGGTGGAACGGAGGGTGAGGGAATTTCGGTGCGCCATGGAGTGCCTACTGAAGCTTCTAGAAGAGAAGGGTGGTGTTGATGAGGAAAGGAATGAAGGGGTTACTGGTAATTATTATTATCATGATTATGATTATGATGCTGTGTTTAGGTTTGATGGAAGGTTGAATTGGAAGAGGGTTCACAGTATTATTATGAGGGAGCGTCGTAGACTTGAGGAGGGTTTGCCAATTTACGCTTACCGGAGGGATATTCTTCACGACATTCATCATCAGCAGATAACGGTATTGGTTGGAGAGACTGGTTCTGGAAAGAGTACTCAGCTGGTACAGTTTCTTGCGGATTCAGGTGTAGGAGCTGCTGAGTCGATTATATGCACCCAACCCCGAAAAATCGCTGCCAGATCATTAGCTCAAAGAGTACAGGAAGAAAGCAATGGATGTTATGAAGGCAATGCGATCAATAGTTATTCGACATTTTCATCCTTGAATGAGTTTGATTCTAAAATAACATTCATGACAGACCACTGTTTATTGCAGCATTACATGGCTGATAAGAATTTGTCTGGTGTCTCATGCATCATAGTTGATGAGGCTCATGAAAGGAGCTTAAACACTGATCTGTTGTTGGCATTGATCAAGAATTTACTCTGTAGAAGGGTTGAAATGCGGCTTATCATTATGTCTGCCACAGCTGATGCAAAGCAGCTGTCTGAATACTTCTATAGTTGTCGAATTGTTCATGTGCTCGGAAGAAGCTTTCCCGTGGATGTGAAATATGTTCCTTCTGACTATGCAGGACATTCTGAGTCTGGCATTGCCCCTTATGTTTCTGATGTTGTCAGAATGGCAATCGAGATTCACAAAACAGAGGAAGAGGGCACTATTCTTGCATTTTTGACCTCACAGATAGAAGTGGAATGGGCGTGTGACAACTTTGAAGCTCTGTCTGCAGTTGCTTTGCCCTTACATGGGAAACTTTTGCCCGGTGAGCAATTTCATGTTTTCCAGAACTATCCTGGAAAAAGGAAAGTGATATTTGCAACCAATCTTGCTGAGACATCTCTCACAATTCCTGGGGTTAAGTATGTGATAGATTCTGGTTTGATTAAAGATAGTCGATATGATCCTGGTAGTGGGATGAATGTTCTTAAGGTTTGTTGGATTAGCCAAAGCTCTGCTAATCAACGGGCCGGCCGTGCTGGGAGGACTGAACCTGGTCGGTGCTATAGATTGTACTCTGAAGCTGATTATCAGTGCATGGAACAAAATCAAGAACCTGAAATTAGAAGAGTGCATCTTGGTGTTGCAGTTTTGAGGATCCTTGCTTTAGGGGTGAAGAATGTGCAGGAGTTTGATTTTGTTGATGCTCCAAGTCAAAGCTCCATTGAGATGGCTATCCGGAATCTAATCCTCTTAGGAGTCATTCAAATGAAGAATAATGTTATTGAATTAACAAATGAAGGTAGGTACCTGGTAAGAATGGGGATCGAACCTAGGCTTGGTAAACTGATTCTTGGCTGTCTTCATCATACACTGGGTAGAGAAGGCATTGTCCTTGCTGCCTTGATGGCTAATGCTAGCAGCATATTCTGCAGAGTTGGTAGTGAAAAGGATAAGCAAAGATCTGATTGTCTTAAAATGCAATTTTGCCATTGTGATGGCGACCTCTTTACCCTTCTTTCTGTGTACAAGGAATGGGAGGGTTTGCCTCGGGAGAGGAGGAACCAGTGGTGTTGGGAAAATAGTATCAATGCCAAATCTATGAGGAGATGCCAAGACACAATTATAGAGCTAGAATCCTGTCTTGAGCGTGAACTTAACCTTGTTGTTCCCAGTTACTGGCGTTGGACACCCCAAATGCCCTCTGAATGTGATATGTATCTGAAAAGGGTTATACTGTCCTCCCTTCCTGAGAATGTAGCCATGTACTCTGGATGCAAGCAACTTGGTTATGAAGTGGCACAAACTGGACAACATGTTCAGCTTCATCCATCTTGTTCATTGCTTGTATTTGCTCAGAAACCTAGTTGGGTGGTTTTTAGTGAGCTTCTTTCACATTCTAATCAATATTTGGTCTGTGTAAGTGCTTTTGATTTTGAATCATTGCACAGCCTTGACCCTCCTCCCTTGTTCGATGTGTGCAATATGGAAAAGCGGAAATTGGAAACCAGGACATTGTCTGGTTTTTGTTGTACTCTTCTCAAGAAATTTTGTGGAAAAGGCAACGGTAATTTGATTAGTCTTGTGTCACGCATACGGAAAGTTTGTGAGGATGAACGAATTTCCATTGAAGTTAATGTTGACCACAATGACATTCAGTTATATGCCACATCACATGATATGGAAACAGCCGTTCAATATGTAAATGAGGTTTTAGAATGTGAGAAAAAGTGGTTACGTACCGAGTGTATTGAAAAATGTTTGTATCATGGGTCTGGTTTCTCACCTATAGCTTTGTTTGGCTCTGGTGCAGAAATTAAGCATTTAGAACTTGGGAAGCGTTCCCTGAGTGTTGACGTTTGTCACCCAAACACAGATGCAATTGAAGACAAACAGCTCCTGATGTTTTTGGAGAAGAATACCTCAGCAAGTGTCTGTTCTGTCCACAAGTACACATGCACTGGGAGGGATGTTGATGACAGGGAAAAGTGGGGCAGGATTACATTTCTTTCCCCGGATGCTGCTTTAAGAGCTGCTGAGCTAGATGGTGAAGAGTTTTGTGGCTCTCCTTTGAAAATTTCTCACTCACAAACAGCTTCTGGAGATAAATCATTTTTGTTTCCTGCCGTCAAAGCAAAAATCTTTTGGCCTCGTAGGCTTAGCAAGGGGGTTGCGATAGTTAAATGTGACATAAAGGATGTTGACATCATGTTGAGAGATTTCTATAGCCTTTCTATAGGAGGAAGGTATGTACGGTGTGAACCTGGTAGAAAGGATGTGGATAGTGTGGTGATAAGTGGGTTTGACAAGGAGCTCTCAGATGCTGAAATTTTAGATGTAGTAAGAAATGCTACAAGTATAAGGATTTCAGACTTTTTCTTGATTAGAGGAGATGCTGTTGGGAATCCACCAGTCAGTGCCTGTGAAGAGGCGCTTCTTAAAGAAATTTCCCCCTTCATGCCCAAGAAAGATCCCCATATTAACTCTTGTCGGGTTCAAGTCTTCCAACCTGAGCCCAGGGATGTATCCATGAGAGCTTTAATCACGTTTGATGGAAGACTACATTTAGAGGCAGCAAAAGCTTTAGAGCAAATTGAGGGAAAGGTGTTGCCAGGATGTCTTTCATGGCAGAAGATAAAATGTCAGCGCGTCTTCCATAGCTCCTTGATAGTTCCTCTGCCAGTGTACCGTGTAATTAGGGAAGAATTGGAGAAAATACTTAAAAGCTTCAGTAATTTAAAGGGTGTTGAATGTAGACTGGAAAAGACTTCCAATGGCTCCCAGAGATTGAAAATTACAGCAAATGCCACACAGACAGTAGCAGAAGTTCGGAGACCTTTCGAAGAATTATCAAGAGGGAAAAGAATCGACCATGCCAGCCTCACCCCTGCAGTTGTGCAACTCTTGCTCTCTCGAGAGGGCTTTAATCTCAAAAGCTCATTGCAGCAGGAGACAGGAACTTACATTCTTATTGACAGGTACAACCTGAGTGTACGTGTGTTTGGGCCCCCAGACAAGGTTTGCTTGGCTCAGCAGAAACTGATTCAATCCCTACTCTCTTTCCATGAGGCAAAGCAATTGGAAATCCATCTGAGGGGCCGGGATCTACCTCCTGACTTAATGAAGCAGGTGGTGAAGCAATTTGGACCAGATCTTAGTGGATTGAAAGTGAAGGTACCTGGGGCAGATCTTGTACTAAACATACGCCGCCAGATAATCTATCTTCGTGGCAACAAGGAGTTGAAACAAAAAGTAGAGGAGTTCATTTTTGAGATCGTGCGTTCTAGTCATCGTGCTGTTGAGGGATTGGGCACCGGACCTAGTTGCCCAATTTGCTTGTGTGAGGTTGAGGATGGATATCTGCTTGAAGGTTGTTGTCACTTATTCTGCCGTTCATGCCTGGTGGATCAATGCGAATCTGCTATAAGAAACCAAGGTACTTTCCCGATATGTTGTGCTCGGGAGGGCTGTGGAGATCCCATTCTGGTCACAGATTTGAAGGCTCTCTTACTGGGTGACAAGTTGGAGGAACTTTTCAGGGCTTCTTTGGGATCTTTTGTGGCATCCAGTGGGGGAACATACAGATTTTGCCCGTCACCTGACTGCCCCTCCGTTTATCGAGTTGCTGATCCTGGGACAGCCGGTGAGCCATTTGTATGCGGGGCATGTTATTCAGAAACTTGTACAAGGTGCCACTTGGAGTATCATCCGTACATATCATGCGATCAATATCGGGAATTCAAGGACGACCCCGACTCATCGCTGAAGGCATGGTGCAGCGGTAAAGAACATGTTAAGCGGTGCCCATCTTGTGGGTATACAATTGAGAAGGTAGATGGTTGCAACCATATTGAGTGCAAGTGTGGGAAGCATGTGTGCTGGGTTTGCTTGGAATTCTTTGGAAGTAGTGATAATTGCTATGACCATTTGAGAAATATACACATGGCCATCATTTGA 5247 0.4456 MHHPDYNHRQPPPFRRHFSKPIDFHPNHYRPPGPPNPIAFQAPNFVLHLRRGRRHLRRDLINSIISQCPSKPQSFSILPYSSDHNYHRRSSSTVDAAILNFLQWVDTLNAVAYLWETRLDGMHDLTPELKSNVMVPSDEDELYSRLRAVFARHVKSLMQEAKELKRWEGESERLTKEIAGMEPQKKNKHYQVGEFFQMNENKKRFEEEKNLVERRVREFRCAMECLLKLLEEKGGVDEERNEGVTGNYYYHDYDYDAVFRFDGRLNWKRVHSIIMRERRRLEEGLPIYAYRRDILHDIHHQQITVLVGETGSGKSTQLVQFLADSGVGAAESIICTQPRKIAARSLAQRVQEESNGCYEGNAINSYSTFSSLNEFDSKITFMTDHCLLQHYMADKNLSGVSCIIVDEAHERSLNTDLLLALIKNLLCRRVEMRLIIMSATADAKQLSEYFYSCRIVHVLGRSFPVDVKYVPSDYAGHSESGIAPYVSDVVRMAIEIHKTEEEGTILAFLTSQIEVEWACDNFEALSAVALPLHGKLLPGEQFHVFQNYPGKRKVIFATNLAETSLTIPGVKYVIDSGLIKDSRYDPGSGMNVLKVCWISQSSANQRAGRAGRTEPGRCYRLYSEADYQCMEQNQEPEIRRVHLGVAVLRILALGVKNVQEFDFVDAPSQSSIEMAIRNLILLGVIQMKNNVIELTNEGRYLVRMGIEPRLGKLILGCLHHTLGREGIVLAALMANASSIFCRVGSEKDKQRSDCLKMQFCHCDGDLFTLLSVYKEWEGLPRERRNQWCWENSINAKSMRRCQDTIIELESCLERELNLVVPSYWRWTPQMPSECDMYLKRVILSSLPENVAMYSGCKQLGYEVAQTGQHVQLHPSCSLLVFAQKPSWVVFSELLSHSNQYLVCVSAFDFESLHSLDPPPLFDVCNMEKRKLETRTLSGFCCTLLKKFCGKGNGNLISLVSRIRKVCEDERISIEVNVDHNDIQLYATSHDMETAVQYVNEVLECEKKWLRTECIEKCLYHGSGFSPIALFGSGAEIKHLELGKRSLSVDVCHPNTDAIEDKQLLMFLEKNTSASVCSVHKYTCTGRDVDDREKWGRITFLSPDAALRAAELDGEEFCGSPLKISHSQTASGDKSFLFPAVKAKIFWPRRLSKGVAIVKCDIKDVDIMLRDFYSLSIGGRYVRCEPGRKDVDSVVISGFDKELSDAEILDVVRNATSIRISDFFLIRGDAVGNPPVSACEEALLKEISPFMPKKDPHINSCRVQVFQPEPRDVSMRALITFDGRLHLEAAKALEQIEGKVLPGCLSWQKIKCQRVFHSSLIVPLPVYRVIREELEKILKSFSNLKGVECRLEKTSNGSQRLKITANATQTVAEVRRPFEELSRGKRIDHASLTPAVVQLLLSREGFNLKSSLQQETGTYILIDRYNLSVRVFGPPDKVCLAQQKLIQSLLSFHEAKQLEIHLRGRDLPPDLMKQVVKQFGPDLSGLKVKVPGADLVLNIRRQIIYLRGNKELKQKVEEFIFEIVRSSHRAVEGLGTGPSCPICLCEVEDGYLLEGCCHLFCRSCLVDQCESAIRNQGTFPICCAREGCGDPILVTDLKALLLGDKLEELFRASLGSFVASSGGTYRFCPSPDCPSVYRVADPGTAGEPFVCGACYSETCTRCHLEYHPYISCDQYREFKDDPDSSLKAWCSGKEHVKRCPSCGYTIEKVDGCNHIECKCGKHVCWVCLEFFGSSDNCYDHLRNIHMAII 1748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g01074 1748 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 295 459 IPR014001 -
Arst10g01074 1748 SMART ultradead3 283 468 IPR014001 -
Arst10g01074 1748 CDD BRcat_RBR 1623 1674 - -
Arst10g01074 1748 Gene3D - 636 679 IPR042035 -
Arst10g01074 1748 Pfam IBR domain, a half RING-finger domain 1614 1671 IPR002867 GO:0008270
Arst10g01074 1748 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 283 792 IPR027417 -
Arst10g01074 1748 Coils Coil 202 222 - -
Arst10g01074 1748 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase 636 679 - -
Arst10g01074 1748 SUPERFAMILY RING/U-box 1622 1676 - -
Arst10g01074 1748 Gene3D - 462 634 IPR027417 -
Arst10g01074 1748 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 838 913 IPR011709 -
Arst10g01074 1748 CDD DEXHc_RHA-like 302 458 - -
Arst10g01074 1748 SMART ibrneu5 1672 1736 IPR002867 GO:0008270
Arst10g01074 1748 SMART ibrneu5 1606 1671 IPR002867 GO:0008270
Arst10g01074 1748 CDD Rcat_RBR_DEAH12-like 1695 1744 - -
Arst10g01074 1748 SUPERFAMILY RING/U-box 1538 1600 - -
Arst10g01074 1748 Coils Coil 157 177 - -
Arst10g01074 1748 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1536 1615 IPR013083 -
Arst10g01074 1748 Pfam Helicase associated domain (HA2) 675 769 IPR007502 GO:0004386
Arst10g01074 1748 SUPERFAMILY RING/U-box 1693 1740 - -
Arst10g01074 1748 ProSitePatterns Zinc finger RING-type signature. 1555 1564 IPR017907 -
Arst10g01074 1748 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 268 461 - -
Arst10g01074 1748 CDD SF2_C_RHA 463 622 - -
Arst10g01074 1748 Gene3D - 265 461 IPR027417 -
Arst10g01074 1748 SMART ha2_5 674 770 IPR007502 GO:0004386
Arst10g01074 1748 Pfam DEAD/DEAH box helicase 294 446 IPR011545 GO:0003676|GO:0005524
Arst10g01074 1748 ProSiteProfiles TRIAD supradomain profile. 1535 1748 IPR044066 -
Arst10g01074 1748 ProSitePatterns Zinc finger C2H2 type domain signature. 1723 1744 IPR013087 -
Arst10g01074 1748 Gene3D - 1667 1746 - -
Arst10g01074 1748 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 401 410 IPR002464 -
Arst10g01074 1748 SMART helicmild6 516 614 IPR001650 -
Arst10g01074 1748 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 488 654 IPR001650 -
Arst10g01074 1748 Pfam Helicase conserved C-terminal domain 494 613 IPR001650 -
Arst10g01074 1748 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 1667 1745 - -
Arst10g01074 1748 FunFam RBR-type E3 ubiquitin transferase 657 763 - -
Arst10g01074 1748 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 462 633 - -
Arst10g01074 1748 ProSiteProfiles Zinc finger RING-type profile. 1539 1581 IPR001841 -
Arst10g01074 1748 PANTHER ATP-DEPENDENT RNA HELICASE 231 920 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g01074 Arst-Chr10 11153192 11159980 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g01074 1554 1730 C3H Transcription Factor Family AT2G31770 29.032 1.55e-13 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g01074 K12818 - gmx:100810008 2515.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst10g01074 10 11153192 11159980 Arst10g01074 10 11153192 11159980 ECH