Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g01001 ATGGCACTTCCATTACCATTTATGTTACTTCTACTATTCCTTGCACCTTCCATTATTTCTTCATCCCCAATTCAAGACCCTGAATTAGTAGTAGAAGAAGTGCACAGGAGCATTAACAATGCATCGGCAAGGAGGAACATGGGATTTCTTTCTTGTGGGAGTGGCAACCCGATCGACGATTGTTGGAGGTGTGATCCGAATTGGGAGAAGAACCGGAAGCGGCTGGCGGACTGTGCCATCGGATTCGGCAAGCACGCCATCGGAGGAAGAGACGGCAAAATATACGTGGTGACGGACCCCGGCGACCACCCTGTTAGCCCAAAGCCAGGGACACTAAGATATGGTGTGATTCAAGAAGAGCCATTGTGGATTGTGTTCAAGCGTGACATGGTAATTAAGCTTAAACAAGAGCTAATGATGAATTCTTTCAAGACCATTGATGGAAGAGGAGTTAGTGTCCACATTGCTGGTGGACCCTGCATCACAATTCAATATGTTTCAAACATTATAATCCATGGAATTAACATTCATGATTGTAAGCAAGGTGGGAATGCTTATGTTAGAGACTCTCCTTCACATTACGGCTGGAGGACTCTTTCGGACGGCGATGGCGTCTCCATCTTTGGTGGCAGCCATGTTTGGGTGGACCATTGCTCGCTGTCGAACTGTCGCGACGGATTAATCGACGCCATTCATGGATCTACTGCCATTACCATCTCCAATAACTATATGACTCACCATAACAAGGTTATGCTTTTGGGACATAGTGATACTTTCACTCAAGATAAGAATATGCAAGTTACCATTGCCTTTAACCATTTTGGAGAAGGCCTAGTTCAGAGGATGCCAAGGTATGGGTATTTCCATGTTGTGAACAATGACTATACTCATTGGCAAATGTATGCCATTGGAGGAAGTGCTGCACCAACTATCAACAGCCAAGGCAACAGATTTCTTGCTCCTAATGACAATACCTTCAAAGAGGTGACAAAGCGTGAGGATACACCACAAAGTAAATGGAAGAATTGGAATTGGAGGTCTAATGGAGATTTAATGTTAAATGGTGCATTCTTTACCCCATCAGGAGCAGGTGCATCTTCAAGCTATGCAAGAGCTTCAAGTTTAGCAGCCAAATCTTCTTCTCTTGTTGCTTCTATCACTGCTTCAGCTGGATCTCTTAAATGTAGAAAGGGATCACGCTGTTGA 1206 0.4436 MALPLPFMLLLLFLAPSIISSSPIQDPELVVEEVHRSINNASARRNMGFLSCGSGNPIDDCWRCDPNWEKNRKRLADCAIGFGKHAIGGRDGKIYVVTDPGDHPVSPKPGTLRYGVIQEEPLWIVFKRDMVIKLKQELMMNSFKTIDGRGVSVHIAGGPCITIQYVSNIIIHGINIHDCKQGGNAYVRDSPSHYGWRTLSDGDGVSIFGGSHVWVDHCSLSNCRDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRYGYFHVVNNDYTHWQMYAIGGSAAPTINSQGNRFLAPNDNTFKEVTKREDTPQSKWKNWNWRSNGDLMLNGAFFTPSGAGASSSYARASSLAAKSSSLVASITASAGSLKCRKGSRC 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g01001 401 Gene3D - 55 394 IPR012334 -
Arst10g01001 401 PRINTS Pollen allergen Amb family signature 101 126 IPR018082 -
Arst10g01001 401 PRINTS Pollen allergen Amb family signature 301 320 IPR018082 -
Arst10g01001 401 PRINTS Pollen allergen Amb family signature 137 153 IPR018082 -
Arst10g01001 401 PRINTS Pollen allergen Amb family signature 279 298 IPR018082 -
Arst10g01001 401 PRINTS Pollen allergen Amb family signature 372 395 IPR018082 -
Arst10g01001 401 PRINTS Pollen allergen Amb family signature 343 367 IPR018082 -
Arst10g01001 401 PRINTS Pollen allergen Amb family signature 201 222 IPR018082 -
Arst10g01001 401 PRINTS Pollen allergen Amb family signature 78 95 IPR018082 -
Arst10g01001 401 SMART amb_all 129 324 IPR002022 -
Arst10g01001 401 Pfam Pectate lyase 136 318 IPR002022 -
Arst10g01001 401 FunFam Pectate lyase 55 394 - -
Arst10g01001 401 SUPERFAMILY Pectin lyase-like 56 392 IPR011050 -
Arst10g01001 401 PANTHER PECTATE LYASE 18-RELATED 25 399 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g01001 Arst-Chr10 9716089 9719116 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g01001 1 401 Polysaccharide Lyase AT5G63180 77.340 0.0 645
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g01001 K01728 - gmx:100782388 730.324