Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst10g01000 ATGGCACTTCCATTACCATTTATGTTACTTCTACTATTCCTTGCACCTTCCATTATTTCTTCATCCCCAATTCAAGACCCTGAATTAGTAGTAGAAGAAGTGCACAGGAGCATTAACAATGCATCGGCAAGGAGGAACATGGGATTTCTTTCTTGTGGGAGTGGCAACCCGATCGACGATTGTTGGAGGTGTGATCCGAATTGGGAGAAGAACCGGAAGCGGCTGGCGGACTGTGCCATCGGATTCGGCAAGCACGCCATCGGAGGAAGAGACGGCAAAATATACGTGGTGACGGACCCCGGCGACCACCCTGTTAGCCCAAAGCCAGGGACACTAAGATATGGTGTGATTCAAGAAGAGCCATTGTGGATTGTGTTCAAGCGTGACATGGTAATTAAGCTTAAACAAGAGCTAATGATGAATTCTTTCAAGACCATTGATGGAAGAGGAGTTAGTGTCCACATTGCTGGTGGACCCTGCATCACAATTCAATATGTTTCAAACATTATAATCCATGGAATTAACATTCATGATTGTAAGCAAGGTGGGAATGCTTATGTTAGAGACTCTCCTTCACATTACGGCTGGAGGACTCTTTCGGACGGCGATGGCGTCTCCATCTTTGGTGGCAGCCATGTTTGGGTGGACCATTGCTCGCTGTCGAACTGTCGCGACGGATTAATCGACGCCATTCATGGATCTACTGCCATTACCATCTCCAATAACTATATGACTCACCATAACAAGGTTATGCTTTTGGGACATAGTGATACTTTCACTCAAGATAAGAATATGCAAGTTACCATTGCCTTTAACCATTTTGGAGAAGGCCTAGTTCAGAGGATGCCAAGATGTAGGTATGGGTATTTCCATGTTGTGAACAATGACTATACTCATTGGCAAATGTATGCCATTGGAGGAAGTGCTGCACCAACTATCAACAGCCAAGGCAACAGATTTCTTGCTCCTAATGACAATACCTTCAAAGAGGTGACAAAGCGTGAGGATACACCACAAAGTAAATGGAAGAATTGGAATTGGAGGTCTAATGGAGATTTAATGTTAAATGGTGCATTCTTTACCCCATCAGGAGCAGGTGCATCTTCAAGCTATGCAAGAGCTTCAAGTTTAGCAGCCAAATCTTCTTCTCTTGTTGCTTCTATCACTGCTTCAGCTGGATCTCTTAAATGTAGAAAGGGATCACGCTGTTGA 1212 0.4431 MALPLPFMLLLLFLAPSIISSSPIQDPELVVEEVHRSINNASARRNMGFLSCGSGNPIDDCWRCDPNWEKNRKRLADCAIGFGKHAIGGRDGKIYVVTDPGDHPVSPKPGTLRYGVIQEEPLWIVFKRDMVIKLKQELMMNSFKTIDGRGVSVHIAGGPCITIQYVSNIIIHGINIHDCKQGGNAYVRDSPSHYGWRTLSDGDGVSIFGGSHVWVDHCSLSNCRDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRCRYGYFHVVNNDYTHWQMYAIGGSAAPTINSQGNRFLAPNDNTFKEVTKREDTPQSKWKNWNWRSNGDLMLNGAFFTPSGAGASSSYARASSLAAKSSSLVASITASAGSLKCRKGSRC 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst10g01000 403 Pfam Pectate lyase 136 320 IPR002022 -
Arst10g01000 403 SUPERFAMILY Pectin lyase-like 40 398 IPR011050 -
Arst10g01000 403 FunFam Pectate lyase 55 396 - -
Arst10g01000 403 PANTHER PECTATE LYASE 18-RELATED 25 401 IPR045032 GO:0030570
Arst10g01000 403 Gene3D - 55 396 IPR012334 -
Arst10g01000 403 PRINTS Pollen allergen Amb family signature 281 300 IPR018082 -
Arst10g01000 403 PRINTS Pollen allergen Amb family signature 101 126 IPR018082 -
Arst10g01000 403 PRINTS Pollen allergen Amb family signature 303 322 IPR018082 -
Arst10g01000 403 PRINTS Pollen allergen Amb family signature 345 369 IPR018082 -
Arst10g01000 403 PRINTS Pollen allergen Amb family signature 137 153 IPR018082 -
Arst10g01000 403 PRINTS Pollen allergen Amb family signature 374 397 IPR018082 -
Arst10g01000 403 PRINTS Pollen allergen Amb family signature 78 95 IPR018082 -
Arst10g01000 403 PRINTS Pollen allergen Amb family signature 201 222 IPR018082 -
Arst10g01000 403 SMART amb_all 129 326 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst10g01000 Arst-Chr10 9716089 9719116 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst10g01000 1 403 Polysaccharide Lyase AT5G63180 77.833 0.0 655
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst10g01000 K01728 - gmx:100782388 740.725
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst10g01000 10 9716089 9719116 Arst10g01000 10 9716089 9719116 ECH
Arst10g01000 10 9716089 9719116 Arst1g02140 1 51714933 51717251 ECH
Arst10g01000 10 9716089 9719116 Arst3g02804 3 42064254 42068281 ECH